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danforthcenter/plantcv-geospatial

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plantcv-geospatial

Geospatial add-on package to PlantCV

builds DeepSource DeepSource

Installation

PlantCV-Geospatial requires main PlantCV v5. Follow the installation instructions to create a conda environment with recommended dependencies:

conda create -n plantcv -c conda-forge  jupyterlab ipympl nodejs

Then, activate the environment and install main PlantCV version 5 and PlantCV-Geospatial from PyPi:

conda activate plantcv
pip install 'plantcv==5.0.0rc1' plantcv-geospatial

Developers should set up a PlantCV conda environment from source code as normal, then:

cd plantcv-geospatial
pip install -e . --config-settings editable_mode=strict

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Geospatial add-on package to PlantCV

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