BioJava 4.2.1 is compatible with Java 7 and 8.

About

BioJava 4.2.1 has been released and is available using Maven from Maven Central as well as manual download (see below). This is purely a bug fix release correcting issues found since the 4.2.0 release.

This release contains over 31 commits from 7 contributors.

Bug fixes

Biojava-structure

• Nucleotide bonds are now generated
• BIO: identifiers are now correctly handled
• Several fixes for CE-Symm
• Substructures now contain seqres groups (isse #449)
• Structures containing insertion codes are now written correctly to mmCIF
• AtomCache now uses the correct default parsing parameters (issue #455)
• Fixed problem with some atom charges that weren't being added
• CATH updated to 4.0.0
• Better ECOD javadocs (issue #452)

Biojava-structure-gui

• Removed javaws dependency (issue #459)

Maven Download

BioJava 4.2.1 requires Maven for the build process. All BioJava jar files are available via Maven Central as of this release.

You can create a BioJava dependency by adding the following XML to your project pom.xml file:

            <dependencies>
                    <dependency>
                            <groupId>org.biojava</groupId>
                            <artifactId>biojava-core</artifactId>
                            <version>4.2.1</version>
                    </dependency>
                    <!-- other biojava jars as needed -->
            </dependencies> 

Manual Download

Browse API docs

You can also browse the documentation at BioJava 4.2.1 api

Release Date

BioJava 4.2.1 has been released on May 3rd, 2016