Skip to content

Navigation Menu

Sign in
Appearance settings

Search code, repositories, users, issues, pull requests...

Provide feedback

We read every piece of feedback, and take your input very seriously.

Saved searches

Use saved searches to filter your results more quickly

Appearance settings

Some ModelCIF files from ModelArchive failed to be parsed with an EmptyColumnException #1054

Copy link
Copy link

Description

@josemduarte
Issue body actions

Example file available at: https://modelarchive.org/doi/10.5452/ma-coffe-slac-c100000_g1_i1
Here is the error:

Exception in thread "main" org.rcsb.cif.EmptyColumnException: column pdbx_atcc is undefined
	at org.rcsb.cif.model.Column$EmptyColumn.getStringData(Column.java:111)
	at org.rcsb.cif.schema.DelegatingStrColumn.get(DelegatingStrColumn.java:17)
	at org.biojava.nbio.structure.io.cif.CifStructureConsumerImpl.addInformationFromEntitySrcNat(CifStructureConsumerImpl.java:1406)

Reactions are currently unavailable

Metadata

Metadata

Assignees

Labels

No labels
No labels

Type

No type

Fields

No fields configured for issues without a type.

Projects

No projects

Milestone

No milestone

Relationships

None yet

Development

No branches or pull requests

Issue actions

Morty Proxy This is a proxified and sanitized view of the page, visit original site.