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Commits on Jan 3, 2025

• Javadoc fix: html-like tag not allowed

  josemduarte

  committed
  d104809

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Commits on May 15, 2024

• Fix issue s1319 Declarations should use Java collection interfaces on biojava-core

  jlerbsc

  committed
  1ae6b52

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Commits on Nov 18, 2022

• vuln-fix: Temporary File Information Disclosure

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  JLLeitschuh

  and

  TeamModerne

  committed
  e3ecec5

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Commits on Feb 1, 2022

• Removing a utility tool that was really internal to biojava, but that was using external resources that are now gone.

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  josemduarte

  committed
  0e47572

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Commits on Jun 9, 2021

• Another https test fix

  josemduarte

  committed
  7b76f8f

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Commits on Feb 26, 2021

• Address review comments.

  heuermh

  committed
  71368be

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Commits on Feb 22, 2021

• Add copy constructor to FastqBuilder.

  heuermh

  committed
  02b0ece

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Commits on Jan 3, 2019

• Automatically convert spaces to tabs

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  sbliven

  committed
  9ae2c4f

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• Remove trailing spaces from java files

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  sbliven

  committed
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Commits on Mar 15, 2018

• Converting junit3 to 4, thanks intellij

  josemduarte

  committed
  1458d85

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Commits on Mar 14, 2018

• Add license to all files

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  sbliven

  committed
  0e8c081

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Commits on Mar 7, 2018

• Unneeded imports

  josemduarte

  committed
  1ba1ac7

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• Merging sequencing module into genome module as per #536

  josemduarte

  committed
  59fd363

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Commits on Aug 15, 2017

• improvements

  valasatava

  committed
  3e2be54

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• Setter for chromosome coordinate systems: 0-based, 1-based

  valasatava

  committed
  b69ddfb

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• unit test fix

  valasatava

  committed
  e5813e8

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• CDS length calculation bug fix

  valasatava

  committed
  033d92e

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Commits on Apr 26, 2017

• Changing all line ending to unix (to match .gitattributes)

  sbliven

  committed
  21ea32a

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Commits on Apr 7, 2017

• Get CDS ranges patch

  valasatava

  committed
  b925bf9

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Commits on Feb 24, 2017

• Chromosome mapping tool: unit test to check handling multiple UTRs preceding the coding region

  

  Yana Valasatava

  committed
  495e3f1

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• Unit tests for converting a genomic position to the position on mRNA for the genes leaving on the forward strand

  

  Yana Valasatava

  committed
  5de7ea5

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Commits on Feb 23, 2017

• Bugfix: chromosome mapping tool returns -1 if position falls outside coding region on the forward strand

  

  Yana Valasatava

  committed
  b42fd90

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Commits on Aug 28, 2016

• Merge pull request #567 from andviane/master

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  josemduarte

  authored
  75a5f59

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Commits on Aug 25, 2016

• More tests for issue #355

  andviane

  committed
  b3142b9

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• Pulling in the @josemduarte test case for issue #355

  andviane

  committed
  df1f905

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Commits on Aug 18, 2016

• making output less verbose

  andreasprlic

  committed
  56e81e6

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• setting default log level to warn

  andreasprlic

  committed
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Commits on Jul 27, 2016

• #534 addressing @joseduarte 's comments

  andreasprlic

  committed
  d01e01e

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Commits on Jul 26, 2016

• Merge branch 'master' of github.com:andreasprlic/biojava

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  andreasprlic

  committed
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• adding a unit test for checking genomic ranges to CDS mapping tools

  andreasprlic

  committed
  993f65a

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Commits on Mar 9, 2016

• Converting initial spaces to tabs.

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  sbliven

  committed
  2417c23

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• Removing template messages

  sbliven

  committed
  2bb0271

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• Remove trailing whitespace globally from .java files

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  sbliven

  committed
  809312e

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• Running addlicense.sh

  sbliven

  committed
  f4e725f

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Commits on Dec 16, 2015

• New test and implementing a proper equals for Location

  josemduarte

  committed
  d144c9b

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