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Commits on Jan 7, 2025

• Javadoc fix: errors in genome module

  josemduarte

  committed
  3580f7b

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Commits on Jan 3, 2025

• Javadoc fix: html-like tag not allowed

  josemduarte

  committed
  d104809

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Commits on May 15, 2024

• Fix issue s1319 Declarations should use Java collection interfaces on biojava-core

  jlerbsc

  committed
  1ae6b52

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Commits on Apr 18, 2024

• Fix sonar issue S2293 Replace the type specification in this constructor call with the diamond operator ('<>')

  jlerbsc

  committed
  b182121

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Commits on Mar 5, 2024

• fix sonar issue 2629 Logging arguments should not require evaluation

  jlerbsc

  committed
  1ac29b3

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Commits on Feb 26, 2024

• fix: issue #1081 Sonar S1132 Strings literals should be placed on the left side when checking for equality

  jlerbsc

  committed
  ac75f31

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Commits on Jun 30, 2023

• Merge remote-tracking branch 'origin/master'

  josemduarte

  committed
  4796663

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• Try-with from sonar

  josemduarte

  committed
  d0fa313

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• Try-with from sonar and main cleanup

  josemduarte

  committed
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Commits on Jun 27, 2023

• Sonar S2129 Constructors should not be used to instantiate 'String', 'BigInteger', 'BigDecimal' and primitive-wrapper classes (Issue #1066)

  jlerbsc

  committed
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Commits on May 7, 2023

• Sonar S4973 '==' and '!=' should not be used when 'equals' is overridden #1052

  

  Pavan Kumar, Thummuru

  committed
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Commits on Apr 16, 2023

• Sonar S4973 '==' and '!=' should not be used when 'equals' is overridden #1052

  tmrpavan

  committed
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Commits on Nov 18, 2022

• vuln-fix: Temporary File Information Disclosure

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  JLLeitschuh

  and

  TeamModerne

  committed
  e3ecec5

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Commits on Feb 1, 2022

• Removing a utility tool that was really internal to biojava, but that was using external resources that are now gone.

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  josemduarte

  committed
  0e47572

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Commits on Jun 9, 2021

• Another https test fix

  josemduarte

  committed
  7b76f8f

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Commits on Feb 26, 2021

• Address review comments.

  heuermh

  committed
  71368be

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Commits on Feb 22, 2021

• Add copy constructor to FastqBuilder.

  heuermh

  committed
  02b0ece

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• Collect to ArrayList rather than LinkedList.

  heuermh

  committed
  1e59bb5

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Commits on Sep 17, 2020

• Remove unused import

  jean-philippe-martin

  committed
  f8148e9

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• Add Javadoc to the overload

  jean-philippe-martin

  committed
  ac475b7

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• Add GFF3Reader overload that accepts Path

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  jean-philippe-martin

  committed
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Commits on Apr 30, 2020

• Fixed impact of refactoring on genome module

  paolopavan

  committed
  8040e39

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Commits on Jan 3, 2019

• Manually fix cases of space indentation identation found by

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  sbliven

  committed
  5baab5e

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• Automatically convert spaces to tabs

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  sbliven

  committed
  9ae2c4f

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• Remove trailing spaces from java files

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  sbliven

  committed
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Commits on Jan 2, 2019

• Merge branch 'bugfixes-4.2'

  sbliven

  committed
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Commits on Mar 15, 2018

• Converting junit3 to 4, thanks intellij

  josemduarte

  committed
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Commits on Mar 14, 2018

• Merge pull request #749 from josemduarte/removeV4deprecations

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  josemduarte

  authored
  763f7ec

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• Add license to all files

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  sbliven

  committed
  0e8c081

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Commits on Mar 12, 2018

• Removing deprecations from v4

  josemduarte

  committed
  9dbf83c

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Commits on Mar 9, 2018

• Added moved note and cleaned up unused variable and some docs

  josemduarte

  committed
  a61fb75

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Commits on Mar 7, 2018

• Unneeded imports

  josemduarte

  committed
  1ba1ac7

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• Merging sequencing module into genome module as per #536

  josemduarte

  committed
  59fd363

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Commits on Oct 3, 2017

• Updating genenames.org url to https

  josemduarte

  committed
  97ca0c1

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• Updating genenames.org url to https

  josemduarte

  committed
  39d8c24

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