Commits

Commits on Jul 6, 2017

[maven-release-plugin] prepare release biojava-4.2.8
josemduarte
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dee8b41
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Fix for pom needed for release to be performed
josemduarte
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d7d7a28
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[maven-release-plugin] rollback the release of biojava-4.2.8
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7c802e0
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[maven-release-plugin] prepare for next development iteration
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f7f5eec
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[maven-release-plugin] prepare release biojava-4.2.8
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9fb8fcc
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Merge pull request #682 from valasatava/bugfixes-4.2
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josemduarte
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1653b63
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Merge pull request #683 from josemduarte/bugfixes-4.2
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9291fab
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Better http than https
josemduarte
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a38c8c8
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Updating ligand URLs to latest RCSB convention
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dc7f3ea
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Commits on Jul 5, 2017

Fixing test after remediation
josemduarte
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42d628d
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Updating to latest RCSB URL
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541b61c
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Updating dssp urls to latest RCSB convention
josemduarte
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4bdd304
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Adding missing methods to the interface
valasatava
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450b43c
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Cherry-pick the c5fa135 commit
valasatava
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a3edf54
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Commits on Mar 8, 2017

[maven-release-plugin]prepare for next development iteration
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714649c
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[maven-release-plugin]prepare release biojava-4.2.7
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b369f5f
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Commits on Mar 7, 2017

Chromosome mapping tool: unit test to check handling multiple UTRs preceding the coding region

Yana Valasatava
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josemduarte
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55639ac
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Unit tests for converting a genomic position to the position on mRNA for the genes leaving on the forward strand

Yana Valasatava
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josemduarte
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73b56c3
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Chromosome mapping tool patch for converting a genomic position to the position on mRNA for the genes leaving on the forward strand

Yana Valasatava
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josemduarte
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4e292b4
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Bugfix: chromosome mapping tool returns -1 if position falls outside coding region on the forward strand

Yana Valasatava
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josemduarte
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331ac26
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Commits on Mar 2, 2017

Merge pull request #640 from josemduarte/bugfixes-4.2
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andreasprlic
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c5fea44
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Bugfix: header was wrongly specified. Better error handling
josemduarte
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eee49af
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Commits on Feb 18, 2017

[maven-release-plugin]prepare for next development iteration
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2888f8f
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[maven-release-plugin]prepare release biojava-4.2.6
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6624619
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Catching empty coordinates earlier in quat sym detection
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0f322ee
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Commits on Feb 15, 2017

Merge pull request #634 from sbliven/bugfixes-4.2
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Fix Quaternary symmetry symmetry detection bug
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Commits on Feb 10, 2017

Better rules for Quaternary symm self-alignments
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sbliven
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Commits on Jan 21, 2017

Now catching empty arrays in getCentroid
josemduarte
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feb9852
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Less verbose logging in AsaCalculator
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c11c0d2
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Better logging in symmetry package
josemduarte
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7f8659a
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Fix for #631
josemduarte
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afd6fcb
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New test to demonstrate issue with cloning
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0d07e69
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Commits on Dec 7, 2016

[maven-release-plugin]prepare for next development iteration
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2a6ff38
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[maven-release-plugin]prepare release biojava-4.2.5
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4db2832
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