A BioIO reader plugin for reading TIFFs using tifffile

See the full documentation on our GitHub pages site - the generic use and installation instructions there will work for this package.

Information about the base reader this package relies on can be found in the bioio-base repository here

Stable Release: pip install bioio-tifffile
Development Head: pip install git+https://github.com/bioio-devs/bioio-tifffile.git

Install bioio-tifffile alongside bioio:

pip install bioio bioio-tifffile

This example shows a simple use case for just accessing the pixel data of the image by explicitly passing this Reader into the BioImage. Passing the Reader into the BioImage instance is optional as bioio will automatically detect installed plug-ins and auto-select the most recently installed plug-in that supports the file passed in.

from bioio import BioImage
import bioio_tifffile

img = BioImage("my_file.tiff", reader=bioio_tifffile.Reader)
img.data

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See CONTRIBUTING.md for information related to developing the code.