From e9a17e132927edab14d70eb156852fb07ad77fb6 Mon Sep 17 00:00:00 2001
From: Jake Vanderplas <vanderplas@astro.washington.edu>
Date: Wed, 11 Dec 2013 14:57:26 -0800
Subject: [PATCH 1/5] fix citation link in layout

---
 doc/themes/astroML/layout.html | 7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

diff --git a/doc/themes/astroML/layout.html b/doc/themes/astroML/layout.html
index 6d293450..bf388f16 100644
--- a/doc/themes/astroML/layout.html
+++ b/doc/themes/astroML/layout.html
@@ -155,7 +155,8 @@
         <h3>News</h3>
 	<p>November 2013: astroML 0.2 has been released!  Get the source on
 	    <a href="http://github.com/astroML/astroML">Github</a></p>
-	<p>Our <a href="{{pathto('index')}}#citing-astroml">
+	<!-- hard-coded link here because pathto() adds an extra # -->
+	<p>Our <a href="/index.html#citing-astroml">
 	    Introduction to astroML paper</a> received the CIDU 2012
 	  best paper award.</p>
         {% endif %}
@@ -178,7 +179,9 @@ <h3>Videos</h3>
 
     <h3>Citing</h3>
     <p>If you use the software, please consider
-    <a href="{{pathto('index')}}#citing-astroml">citing astroML</a>.</p>
+
+    <!-- hard-coded link here because pathto() adds an extra # -->
+    <a href="/index.html#citing-astroml">citing astroML</a>.</p>
 
 
         {% if pagename == 'index' %}

From efd082d5dd60fa01410893f932b50f35c73af4cb Mon Sep 17 00:00:00 2001
From: Jake Vanderplas <vanderplas@astro.washington.edu>
Date: Wed, 11 Dec 2013 15:02:03 -0800
Subject: [PATCH 2/5] DOC: version->0.2

---
 doc/conf.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/doc/conf.py b/doc/conf.py
index 0ec5cc96..a7d09ba8 100644
--- a/doc/conf.py
+++ b/doc/conf.py
@@ -83,9 +83,9 @@
 # built documents.
 #
 # The short X.Y version.
-version = '0.1'
+version = '0.2'
 # The full version, including alpha/beta/rc tags.
-release = '0.1'
+release = '0.2'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

From aa400350a46857b4e752d54b8541d52f3c6f1dba Mon Sep 17 00:00:00 2001
From: Jake Vanderplas <vanderplas@astro.washington.edu>
Date: Wed, 11 Dec 2013 15:06:57 -0800
Subject: [PATCH 3/5] DOC: fix formatting in figure captions

---
 book_figures/chapter10/fig_fft_example.py | 2 +-
 book_figures/chapter8/fig_lasso_ridge.py  | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/book_figures/chapter10/fig_fft_example.py b/book_figures/chapter10/fig_fft_example.py
index b1311f56..2a04112c 100644
--- a/book_figures/chapter10/fig_fft_example.py
+++ b/book_figures/chapter10/fig_fft_example.py
@@ -11,7 +11,7 @@
 The discrete Fourier transform is computed as described in Section 10.2.3.
 For both noise realizations, the correct frequency f = (2pi)-1 ~ 0.159 is
 easily discernible in the bottom panel. Note that the height of peaks is the
-same for both noise realizations. The large value of |H(f = 0)| for data
+same for both noise realizations. The large value of abs(H(f = 0)) for data
 with larger noise is due to the vertical offset.
 """
 # Author: Jake VanderPlas
diff --git a/book_figures/chapter8/fig_lasso_ridge.py b/book_figures/chapter8/fig_lasso_ridge.py
index 60bbbb55..f5fb7644 100644
--- a/book_figures/chapter8/fig_lasso_ridge.py
+++ b/book_figures/chapter8/fig_lasso_ridge.py
@@ -7,7 +7,7 @@
 regularization (LASSO regression) and the left panel L2 regularization
 (ridge regularization). The ellipses indicate the posterior distribution for
 no prior or regularization. The solid lines show the constraints due to
-regularization (limiting theta^2 for ridge regression and |theta| for LASSO
+regularization (limiting theta^2 for ridge regression and abs(theta) for LASSO
 regression). The corners of the L1 regularization create more opportunities
 for the solution to have zeros for some of the weights.
 """

From c546669783a2744043140ac72ceebddc3a85065b Mon Sep 17 00:00:00 2001
From: Jake Vanderplas <vanderplas@astro.washington.edu>
Date: Fri, 13 Dec 2013 16:16:23 -0800
Subject: [PATCH 4/5] DOC: fix LLE example

---
 book_figures/chapter7/fig_PCA_LLE.py | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/book_figures/chapter7/fig_PCA_LLE.py b/book_figures/chapter7/fig_PCA_LLE.py
index 50956c88..1f693790 100644
--- a/book_figures/chapter7/fig_PCA_LLE.py
+++ b/book_figures/chapter7/fig_PCA_LLE.py
@@ -51,6 +51,8 @@
 data = fetch_sdss_corrected_spectra()
 coeffs_PCA = data['coeffs']
 c_PCA = data['lineindex_cln']
+spec = sdss_corrected_spectra.reconstruct_spectra(data)
+color = data['lineindex_cln']
 
 
 #------------------------------------------------------------

From 3c70906745d8f22de3d929abd6fdc4a96785d132 Mon Sep 17 00:00:00 2001
From: Jake Vanderplas <vanderplas@astro.washington.edu>
Date: Mon, 16 Dec 2013 12:34:04 -0800
Subject: [PATCH 5/5] DOC: typo in correlation figure

---
 book_figures/chapter6/fig_correlation_function.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/book_figures/chapter6/fig_correlation_function.py b/book_figures/chapter6/fig_correlation_function.py
index 66d9bfdd..593da8ea 100644
--- a/book_figures/chapter6/fig_correlation_function.py
+++ b/book_figures/chapter6/fig_correlation_function.py
@@ -1,4 +1,4 @@
-"""
+r"""
 Angular Two-point Correlation Function
 --------------------------------------
 Figure 6.17