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aretasg/SolPred

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Organic compound aqueous solubility prediction using the Delaney (ESOL) dataset

This is an attempt to model the Delany aqueous solubility dataset published in 2004 with contemporary ML approaches using Pycaret package and utilising ensemble stacking of top 3 best performing models.

Two approaches are taken to model the dataset

  1. Using all the descriptors as initially proposed in the Delaney's publication
  2. Using VSA and other descriptors as proposed in other publications

Installation

git clone https://github.com/aretasg/SolPred.git
cd sol_pred
conda env create -f environment.yml
conda activate solpred

Validation (Unseen data) Set Metrics

Model MAE RMSE R2
1 0.4572 0.4537 0.8886
2 0.4558 0.4587 0.8874
  • Both methods performed evidently better then the orignal ESOL and comparably between each other with the former (2) having a slightly better residual plot with less outliers
  • For all metrics and other please refer to the end of each jupyter notebook

Availability

Both methods are distributed as .pkl files and an example script to run them

References

  • Delaney, 2004
  • Avdeef, 2020

License

MIT license

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Machine learning model to predict aqueous solubility of organic compounds

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