Merge pull request #49 from antigenomics/chore/repo-cleanup

chore: src-layout, notebooks→examples, distribute working docs out of root

3.3.0 — fit_density_space(chunk_size=), version drift fixed

mirpy-lib 3.2.0 — mir.explain: explainable channel readouts (T7)

release: 3.1.1 — clean re-release of 3.1.0

3.1.0 was withdrawn from PyPI; 3.1.1 restores the package under a fresh version
with no functional changes (identical API, coordinates, and behaviour).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

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Merge pull request #42 from antigenomics/fix-2

Fix 2

Merge pull request #41 from antigenomics/old-macos

Old macos

Merge pull request #40 from antigenomics/fix-pypi

fix(ci): make wheel verification matrix deterministic across OS/Python

Merge pull request #37 from antigenomics/dev

v 1.1.1