Commits

Commits on Sep 8, 2017

Fixing phosphosite urls and changing default url timeout to 30s
josemduarte
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67ca7f2
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Commits on Aug 22, 2017

Merge pull request #701 from valasatava/bug-fix-yana
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josemduarte
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1bedd9a
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Commits on Aug 15, 2017

improvements
valasatava
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3e2be54
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Setter for chromosome coordinate systems: 0-based, 1-based
valasatava
committed
b69ddfb
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unit test fix
valasatava
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e5813e8
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CDS length calculation bug fix
valasatava
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033d92e
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Commits on Aug 10, 2017

Merge pull request #691 from lukeczapla/master
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lafita
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663c62f
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Merge pull request #698 from tulay/obo-namespace
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lafita
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e957d07
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Commits on Aug 9, 2017

throw exception instead of fail
tulay
committed
565589d
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fixed minor issue with lack of this keyword, re-ran tests
luke czapla
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9a38510
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made max values non-static and created final DEFAULT constants
luke czapla
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361a023
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Renamed MaxStagger (etc.) to maxStagger (etc.)
luke czapla
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0d0ed55
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Subclasses not serializable
luke czapla
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d8a0843
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Commits on Aug 8, 2017

Biojava #695: Stores namespace as annotation
tulay
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a83dbc9
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Commits on Aug 6, 2017

Structure object unmarked as transient for serialization
luke czapla
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8fff10f
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Commits on Aug 5, 2017

Merge remote-tracking branch 'upstream/master'
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luke czapla
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ff49ad2
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Commits on Aug 4, 2017

Merge pull request #693 from lafita/serialize
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lafita
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0c99ed0
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Commits on Aug 3, 2017

Merge branch 'master' of github.com:biojava/biojava into serialize
lafita
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44d7351
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Commits on Aug 2, 2017

Another v5 test fix
josemduarte
committed
5f138f3
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Fixing test after PDB v5 remediation
josemduarte
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30f46d1
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Commits on Jul 31, 2017

getters and setters all have full sentence JavaDoc
luke czapla
committed
29ec564
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removed added * import
luke czapla
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077bc2a
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Full sentence revision of all JavaDoc and addition of separate error checking method

luke czapla
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luke czapla
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a182c8d
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Commits on Jul 28, 2017

and the other files

luke czapla
authored and
luke czapla
committed
4908343
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fixed nomenclature for constants

luke czapla
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luke czapla
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e99cad7
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Add a more complete check to structure serialization test
lafita
committed
5feb565
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Make the secondary structure objects serializable
lafita
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bc14209
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Commits on Jul 27, 2017

JavaDoc

luke czapla
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luke czapla
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c9a1dd9
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Commits on Jul 26, 2017

Style changes

luke czapla
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luke czapla
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53fb6c1
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removed SNAPSHOT from since annotation

luke czapla
authored and
luke czapla
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18a75d7
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Serialization support for BasePairParameters class

luke czapla
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luke czapla
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8a4ffa8
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final tests using getLength() and others

luke czapla
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luke czapla
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7f27f94
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Getters and setters for default settings

luke czapla
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luke czapla
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3f8b75b
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Proposed revision

luke czapla
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luke czapla
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8967bcf
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Commits on Jul 25, 2017

just minor forgotten exception line

luke czapla
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luke czapla
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6889ca7
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