Read-Lab-Confederation
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nyc-subway-anthrax-study
nyc-subway-anthrax-study PublicSearching for anthrax in the New York City subway metagenome.
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papista-genome-sequencing
papista-genome-sequencing PublicWhole genome sequencing of Pandoraea apista using Oxford Nanopore MinION
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MRSA_bloodstream_clusters
MRSA_bloodstream_clusters Public2018-2019 Genomic Clusters of bacteremia associated with MRSA
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Repositories
- lab_hackathon2 Public
Our project is to adapt Brooke's script for determining AMR reads per million from meta genomic data
Read-Lab-Confederation/lab_hackathon2’s past year of commit activity - emergent-metagenome-pipeline Public
A pipeline written in nextflow for processing metagenomes and identifying sequences within metagenomes
Read-Lab-Confederation/emergent-metagenome-pipeline’s past year of commit activity - Ct_MAP_analysis Public
Read-Lab-Confederation/Ct_MAP_analysis’s past year of commit activity - panplots Public Forked from SioStef/panplots
A small R script for generating pangenome accumulation curves
Read-Lab-Confederation/panplots’s past year of commit activity - hAMRoaster Public Forked from ewissel/hAMRoaster
hAMRoaster is an analysis pipeline that can compare the output of nine different tools for detecting AMR genes and provide metrics of their performance
Read-Lab-Confederation/hAMRoaster’s past year of commit activity - Saureus_short_seq_database Public
Creating fasta file for the database of short DNA sequences from S. aureus publications https://docs.google.com/spreadsheets/d/1-8TOA2eY1j5h5frcOCiKiCoTMN0JCwU3sVijJ-GvHSc/edit?usp=sharing
Read-Lab-Confederation/Saureus_short_seq_database’s past year of commit activity
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