Some ab inito structure determination programs require the number of atoms by element expected in the asymmetric unit. This program returns the number of atoms by element based on the single-letter RNA base sequence given as a command line argument. This program assumes that there is a 5'-phosphate. Adjust the results accordingly if this is not the case.
Usage: python script.py SEQUENCE
Example: python script.py AGAGAAGAAAGGGAAAUUUUUUUUUUUUUUUUExample output.
Atom counts for RNA sequence: AGAGAAGAAAGGGAAAUUUUUUUUUUUUUUUU
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C: 304
H: 448
N: 112
O: 262
P: 32The script only depends on Python3.
It imports only the sys module.
| Version | Changes | Date |
|---|---|---|
| Version 0.1 | Added badges, funding, and update table. Initial commit. | 2025 January 20 |
- NIH: R01 CA242845
- NIH: R01 AI088011
- NIH: P30 CA225520 (PI: R. Mannel)
- NIH: P20 GM103640 and P30 GM145423 (PI: A. West)