Commits

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Commits on Jun 25, 2026

Improve handling of 10x chemistry
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dc788ef
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Commits on Jun 11, 2026

Expose filterDisallowedClasses for UpdateSeuratPrototype
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f68174d
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Expose filterDisallowedClasses for RIRA
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6eb8ab3
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Commits on Jun 9, 2026

Also track TRD data
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6d98459
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Commits on Jun 8, 2026

Bugfix to re-running RIRA
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dde9a8c
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Improve handling of RIRA filters
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6bf3fff
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Commits on Jun 7, 2026

Include RIRA/Unknown in seurat description
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8b225fb
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Commits on May 22, 2026

Add starcat tool
Sebastian Benjamin
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42b41fa
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Commits on Apr 28, 2026

Account for gzip metadata files
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7bd6afb
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Commits on Apr 23, 2026

Correct typo
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8b70b07
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Commits on Apr 16, 2026

Bugfix to gzfile()
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9da4eb1
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Commits on Apr 15, 2026

Bugfix to gzfile()
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0fe21a0
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Allow user to set minEDS
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f55483e
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Commits on Apr 10, 2026

Always gzip seurat metadata CSV
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793037a
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Commits on Mar 21, 2026

Allow vireo to use reference VCF for cellsnp-lite alone
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4e2e131
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Commits on Mar 16, 2026

Add GEX/SRA link
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3ee1181
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Commits on Mar 14, 2026

Improve handling of single cell pipeline when no new output is created
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0e3c514
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Commits on Mar 9, 2026

More automatic capture of TCR updates
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8b67f38
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Commits on Mar 2, 2026

Support minFractionCloneActivated
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d356f84
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Commits on Feb 10, 2026

pryr -> lobstr
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769d0da
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Commits on Feb 8, 2026

Remove older components
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dd372e1
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Commits on Feb 2, 2026

Store cdr3WithProductive with response data
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0d1b5f1
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Commits on Jan 31, 2026

Bugfix when ADT filter specified by no ADT data exist
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93bb5df
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Commits on Jan 29, 2026

Bugfix to expectedDefaultAssay in merge
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7ab62f3
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Commits on Jan 28, 2026

Support expectedDefaultAssay in merge
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b70e2b8
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Add check for null objects are Pseudobulking
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c74f621
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Commits on Jan 27, 2026

Support new gene component
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035009d
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Commits on Jan 20, 2026

Update filename case
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0ec3f23
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Support --skip-tso-trimming nimble flag
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509f6bb
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Commits on Jan 18, 2026

Set baseUrl in PredictTcellActivation.R
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8dad895
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Commits on Jan 15, 2026

Bugfix to barcode inclusion list
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224f360
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Commits on Jan 7, 2026

Auto-add missing columns to PredictTcellActivation
Show description for 30eda78
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30eda78
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Commits on Jan 6, 2026

Bugfix long/int conversions
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868a5bb
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Debug int/long error
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b89aea1
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Commits on Jan 4, 2026

Integer -> Long
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72e4a95
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