Commits

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Commits on Jul 3, 2026

Merge discvr-26.3 to discvr-26.7
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committed
56ccdec
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Commits on Jun 24, 2026

Add --memory-mapping for kraken2
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committed
a9aec60
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Adjust DB names for kraken2
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committed
84c9251
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Bugfixes to kraken2
bbimber
committed
f3c8acc
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Commits on Jun 21, 2026

Add wrapper for Kracken2 (#401)
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bbimber
authored
dbd5310
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Commits on Jun 15, 2026

Add message for Exception
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committed
c8ca6a7
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Commits on Jun 10, 2026

Bugfix to maintenance job cancellation
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committed
5b4f78c
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Bugfix to maintenance job cancellation
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committed
5df0026
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Commits on Jun 9, 2026

CSP exceptions
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3013b74
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Fix typo
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committed
6268487
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Use constants
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committed
359a947
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Hack to allow maintenance jobs to respect cancellation
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committed
09aabc5
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Commits on Jun 8, 2026

Merge discvr-26.3 to develop
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committed
cc2ec93
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Commits on Jun 5, 2026

Ensure bismark ends with sorted BAM
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committed
86605c9
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Commits on Jun 2, 2026

ProcessBuilder -> LabKeyProcessBuilder (#427)
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labkey-jeckels
authored
31a70e6
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Commits on May 29, 2026

Add missing argument
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committed
63a737a
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Test fix
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committed
3a8ab2a
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Use correct method for list deserialization
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committed
8957ad3
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Commits on May 28, 2026

Use correct method for list deserialization
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committed
7396d6f
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Drop SupportsPedigree in whatshap
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committed
5106e7e
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Add WhatsHap phasing step
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committed
e41af6e
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Commits on May 27, 2026

Migrate away from deprecated methods (#426)
labkey-adam
authored
3ada127
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Commits on May 20, 2026

Merge discvr-26.3 to develop
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committed
8261050
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Bugfix to SequenceAnalysisMaintenanceTask
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fce0dac
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Commits on May 12, 2026

Smarter resume in specHLA
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committed
25b2e15
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Include FASTA reference in specHLA/samtools
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5694b2e
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Commits on May 11, 2026

Better cleanup in specHLA
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committed
c3c0782
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Support specHLA
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committed
6cba97b
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Commits on May 8, 2026

Bugfix when remote directory doesnt exist
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adb4690
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Commits on Apr 30, 2026

Drop redundant index (#424)
labkey-adam
authored
3936e0b
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Commits on Apr 23, 2026

Another appendName -> appendPath
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committed
e39d74b
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Correct typo
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738f612
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appendName -> appendPath
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5863219
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Commits on Apr 22, 2026

Bugfix to TaskFileManagerImpl when work dir was already cleaned
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committed
db49996
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Commits on Mar 26, 2026

Merge discvr-25.11 to discvr-26.3
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061d810
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