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Commits on Nov 30, 2016

addressing requested changes re. throwing exceptions.
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cc56288
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moving to Java 7
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4ee39f8
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now also accepting old header line
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8210484
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#610 switching test to junit version 4
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e1dbb04
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Commits on Nov 29, 2016

creating local dir, if it does not exist.
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1ce3e1e
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fix for #610
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6f28672
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Commits on Aug 18, 2016

making output less verbose
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56e81e6
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setting default log level to warn
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07f244a
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Commits on Aug 8, 2016

new utility classes to detect if a Group is polymeric, an amino acid, or a nucleotide group.
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46560c7
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Commits on Jun 15, 2016

Merge branch 'master' of github.com:biojava/biojava
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ea722c2
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some formatting improvements.
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80dd887
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[maven-release-plugin]prepare for next development iteration
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34b2bf9
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[maven-release-plugin]prepare release biojava-5.0.0-alpha4
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de01d08
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Merge branch 'bugfixes-4.2'
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1206ace
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[maven-release-plugin]prepare for next development iteration
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62926e6
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[maven-release-plugin]prepare release biojava-4.2.2
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a74758c
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[maven-release-plugin] rollback the release of biojava-4.2.2
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ebacfd7
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[maven-release-plugin]prepare for next development iteration
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f12dad9
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[maven-release-plugin]prepare release biojava-4.2.2
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1dfb457
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[maven-release-plugin] rollback the release of biojava-4.2.2
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1648288
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[maven-release-plugin]prepare release biojava-4.2.2
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082919b
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Commits on Jun 14, 2016

merging in latest ptm modifications from master branch
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8b08584
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Updating ptm list.
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3fa10a9
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Added list of chromophores to ptm_list.xml file, updated unit tests
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417e2da
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Commits on Jun 10, 2016

Reverting some changes to be compliant with the "old" way of doing chain IDs.
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cba1ca2
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Merge pull request #502 from andreasprlic/master
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3509775
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merging in updated ptm_list.xml
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84c1e9c
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merging in updated ptm_list.xml
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de6d033
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merging in updated ptm_list.xml
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80dc3a9
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distance have to be looked up by element name, not atom name
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2798876
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Adds a new definitions file so the code can correctly detect Metal bonds. Slightly more efficient representation of standard amino acids.
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f8ac919
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merging in fixes related to PTMs into bug fix branch
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849001f
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update for 2VH3 TY2
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58c6743
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updating legacy chemical component and atom names to current naming conventions.
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913d1ef
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distance have to be looked up by element name, not atom name
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ad192d9
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