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Commits on Feb 8, 2017

Merge branch 'upstream_master'
emckee2006
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3b3354e
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Add in previously missed protein aliases...
emckee2006
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246525b
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Commits on Nov 9, 2016

Fix #596. Remove test for GenBank identifier parsing
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sbliven
committed
837dc63
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Commits on Sep 14, 2016

Also get short name when getting other protein aliases
emckee2006
committed
9b0d208
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Commits on Aug 25, 2016

Merge branch 'pr/44'
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emckee2006
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c819e5a
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add ability to pull gene and protein aliases from uniprot
emckee2006
committed
6c6cdaa
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Commits on Aug 23, 2016

Merge pull request #555 from andreasprlic/master
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sbliven
authored
715fce4
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Commits on Aug 21, 2016

GenericInsdcHeaderFormat: Fixed formatting codes.
andviane
committed
4ee01d4
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Commits on Aug 18, 2016

making output less verbose
andreasprlic
committed
56e81e6
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setting default log level to warn
andreasprlic
committed
07f244a
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making output less verbose
andreasprlic
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285583d
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Commits on Aug 16, 2016

[maven-release-plugin]prepare for next development iteration
Jenkins
committed
2a14437
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[maven-release-plugin]prepare release biojava-5.0.0-alpha6
Jenkins
committed
18dcaba
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updating to latest version of Cobertura tests. Now can successfully run locally.
andreasprlic
committed
fbf294c
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Commits on Jul 4, 2016

Merge pull request #525 from andreasprlic/master
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josemduarte
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2fca095
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Merge pull request #519 from DevFactory/release--inefficient-string-buffering-fix-1
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josemduarte
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35deefe
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Commits on Jul 1, 2016

Merge pull request #528 from DevFactory/release--toString()-should-never-be-called-on-a-String-object-fix-1
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andreasprlic
authored
0d197bf
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Update readme.md
andreasprlic
authored
2fc8ad3
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Cleanup - squid:S1858 - "toString()" should never be called on a String object
Mohamed Ezzat
committed
082d860
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pmd:InefficientStringBuffering - Inefficient String Buffering
Mohamed Ezzat
committed
da3b8e8
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Commits on Jun 30, 2016

#505 switching to https for all NCBI utils traffic.
andreasprlic
committed
c013771
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#505 switching to https for all NCBI utils traffic.
andreasprlic
committed
0175104
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Commits on Jun 27, 2016

Normalize percentage of identity by the length without gaps #521
lafita
committed
3722ce5
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Commits on Jun 24, 2016

Implement tests for new utility methods in sequence objects #491
lafita
committed
c8b1d07
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Method for total gapped positions and coverage in aligned sequences
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lafita
committed
8a9927c
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Method for percentage of identity of a sequence pair #491
lafita
committed
f57ede4
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Commits on Jun 16, 2016

squid:S2272 - "Iterator.next()" methods should throw "NoSuchElementException"
Mohamed Ezzat
committed
f3f7395
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Commits on Jun 15, 2016

[maven-release-plugin]prepare for next development iteration
Jenkins
committed
34b2bf9
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[maven-release-plugin]prepare release biojava-5.0.0-alpha4
Jenkins
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de01d08
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squid:S2063 - Comparators should be Serializable
Mohamed Ezzat
committed
23136cb
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Commits on Jun 10, 2016

squid:S2130 - Parsing should be used to convert Strings to primitives
Mohamed Ezzat
committed
5d3b8e7
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Commits on Jun 9, 2016

Merge pull request #499 from DevFactory/release--primitives-should-not-be-boxed-just-for-String-conversion-fix-1
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andreasprlic
authored
1d874f1
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Commits on Jun 5, 2016

squid:S2131 - Primitives should not be boxed just for String conversion
Mohamed Ezzat
committed
fa52fd8
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Commits on Jun 4, 2016

squid:S1197 - Array designators should be on the type, not the variable
Mohamed Ezzat
committed
713171b
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Commits on Jun 3, 2016

squid:S1125 - Literal boolean values should not be used in condition expressions
Mohamed Ezzat
committed
2c1793e
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