Commits

Commits on Dec 7, 2016

[maven-release-plugin]prepare release biojava-4.2.5
Jenkins
committed
4db2832
Copy full SHA for 4db2832
Merge pull request #612 from andreasprlic/bugfixes-4.2
Show description for 893e63d
josemduarte
authored
893e63d
Copy full SHA for 893e63d

Commits on Nov 30, 2016

addressing requested changes re. throwing exceptions.
andreasprlic
committed
4c6c348
Copy full SHA for 4c6c348
moving to Java 7
andreasprlic
committed
aae364b
Copy full SHA for aae364b
now also accepting old header line
andreasprlic
committed
f15e4cf
Copy full SHA for f15e4cf
#610 switching test to junit version 4
andreasprlic
committed
ad60902
Copy full SHA for ad60902

Commits on Nov 29, 2016

creating local dir, if it does not exist.
andreasprlic
committed
4145223
Copy full SHA for 4145223
fix for #610
andreasprlic
committed
8acab40
Copy full SHA for 8acab40

Commits on Nov 23, 2016

Adding non-standard sg check to pdb parser
josemduarte
committed
2d4a720
Copy full SHA for 2d4a720
Fixed bug: NPE for CrystalBuilder on 4hhb. Moved TestCrystalBuilder to integrationtest.
josemduarte
committed
a2f900c
Copy full SHA for a2f900c
Now using the new fields from CrystalBuilder
josemduarte
committed
cfd6f4a
Copy full SHA for cfd6f4a

Commits on Nov 22, 2016

Some extra rare fields in atom_sites
josemduarte
committed
1dbfcbd
Copy full SHA for 1dbfcbd
Fixing npe introduced in last commit
josemduarte
committed
b824612
Copy full SHA for b824612
Implementing new crystallographic metadata fields.
josemduarte
committed
508e770
Copy full SHA for 508e770
Implementing parsing of atom_sites category in mmcif parser/consumer
josemduarte
committed
ad79f0e
Copy full SHA for ad79f0e

Commits on Nov 9, 2016

Merge pull request #599 from sbliven/fix596-4.2
Show description for 09d47c7
sbliven
authored
09d47c7
Copy full SHA for 09d47c7
Fix #596. Remove test for GenBank identifier parsing
Show description for 31ace5a
sbliven
committed
31ace5a
Copy full SHA for 31ace5a

Commits on Sep 21, 2016

Inserts space when altLoc is null, so that the rest of fields are properly aligned.

altaite
authored and
josemduarte
committed
6aa44f8
Copy full SHA for 6aa44f8
FileConvert fix - added empty space if altLoc is null.

altaite
authored and
josemduarte
committed
48708c3
Copy full SHA for 48708c3

Commits on Sep 3, 2016

More tests for issue #355

andviane
authored and
josemduarte
committed
2c35f17
Copy full SHA for 2c35f17
Pulling in the @josemduarte test case for issue #355

andviane
authored and
josemduarte
committed
66933a6
Copy full SHA for 66933a6
Cleanup

andviane
authored and
josemduarte
committed
8ce7640
Copy full SHA for 8ce7640
Fix 355

andviane
authored and
josemduarte
committed
b30a0e2
Copy full SHA for b30a0e2

Commits on Aug 30, 2016

Fix compilation error after cherry-pick
sbliven
committed
5d4eba2
Copy full SHA for 5d4eba2

Commits on Aug 29, 2016

Update Jmol to 14.6.2_2016.08.28
sbliven
committed
69e105a
Copy full SHA for 69e105a
Switching Jmol interchange format to MMCIF
Show description for 50595e0
sbliven
committed
50595e0
Copy full SHA for 50595e0
Update to Jmol 14.6.1
Show description for 2827ae2
sbliven
committed
2827ae2
Copy full SHA for 2827ae2

Commits on Aug 10, 2016

Fix MultipleAlignmentJmol resizing bug
Show description for fa9ecab
sbliven
committed
fa9ecab
Copy full SHA for fa9ecab

Commits on Aug 1, 2016

Fixing cath urls according to their final layout
josemduarte
committed
af526f1
Copy full SHA for af526f1

Commits on Jul 29, 2016

[maven-release-plugin]prepare for next development iteration
Jenkins
committed
e2cc068
Copy full SHA for e2cc068
[maven-release-plugin]prepare release biojava-4.2.4
Jenkins
committed
79f57d7
Copy full SHA for 79f57d7
Merge pull request #547 from andreasprlic/bugfixes-4.2
Show description for b88dd4e
josemduarte
authored
b88dd4e
Copy full SHA for b88dd4e
new utility class for chromosome mappings.
andreasprlic
committed
795be8f
Copy full SHA for 795be8f
adding new dependency on guava
andreasprlic
committed
f63309d
Copy full SHA for f63309d
new utility class for chromosome mappings.
andreasprlic
committed
04b8f4a
Copy full SHA for 04b8f4a