BEAST 2 Docker and Apptainer

Docker and Apptainer setup for the BEAST 2 software

Docker

Pull the Docker image:

./workspace/scripts/pull.sh

Run BEAST2:

cd workspace
./scripts/run.sh examples/testRNA.xml

Run BEAST2 with BEAGLE:

cd workspace
./scripts/run.sh -beagle -beagle_SSE -beagle_CPU -threads 4 examples/testRNA.xml

Build the Apptainer image:

./workspace/scripts/apptainer_build.sh

Run BEAST2:

./beast2.sif workspace/examples/testRNA.xml

Run BEAST2 with BEAGLE:

./beast2.sif -beagle -beagle_SSE -beagle_CPU -threads 4 workspace/examples/testRNA.xml

Name	Name	Last commit message	Last commit date
Latest commit History 47 Commits 47 Commits
.github/workflows	.github/workflows
apptainer	apptainer
dockerfiles	dockerfiles
workspace	workspace
.dockerignore	.dockerignore
.env	.env
.gitattributes	.gitattributes
.gitignore	.gitignore
LICENSE	LICENSE
README.md	README.md
docker-compose.yaml	docker-compose.yaml