Large plethora of bug fixes, and compatability issues.
Docker image built off the rocker:rstudio base image can be found at greenleaflab/archr:latest

What's Changed

• Update dev with new features. by @jeffmgranja in #1516
• Dev match by @rcorces in #1529
• Dev max cells by @rcorces in #1556
• Dev leidenalg by @rcorces in #1570
• Dev mrc by @rcorces in #1573
• Dev gene mismatch by @rcorces in #1594
• Update AnnotationPeaks.R by @Goultard59 in #1638
• Dev metadata by @rcorces in #1655
• Update ArrowUtils.R by @Goultard59 in #1672
• Dev trajectory by @rcorces in #1673
• add ability to get negative correlations by @rcorces in #1688
• add define for ARMA_64BIT_WORD by @rcorces in #1721
• Dev track install by @rcorces in #1723
• Dev module score by @rcorces in #1666
• Dev trajectory heatmap by @rcorces in #1730
• fix bug in blacklist by @rcorces in #1745
• fix window title for ArchRBrowser by @rcorces in #1762
• Dev suppress warnings by @rcorces in #1776
• add ability to save gene score regions by @rcorces in #1794
• set bcPass as a character vector by @rcorces in #1795
• Dev desc by @rcorces in #1809
• address ARMA_64BIT_WORD issue for large matrices by @rcorces in #1861
• Update GroupExport.R by @joshchiou in #2006
• change plotting to work with ggplot2 >=v3.5 by @immanuelazn in #2236
• remove seurat/harmony warnings by @immanuelazn in #2235
• fix issues with creating Seuratv5 obj by @immanuelazn in #2237
• Ia/fix lapply plot bug by @immanuelazn in #2240
• Update README.md by @immanuelazn in #2238
• Fix issue with multimodal reduced dim colnames by @immanuelazn in 9c1476e

New Contributors

• @jeffmgranja made their first contribution in #1516
• @Goultard59 made their first contribution in #1638
• @joshchiou made their first contribution in #2006

Full Changelog: v1.0.2...v1.0.3rc2

improved stability, lots of bug fixes, small feature additions across many functions, improved import of multiome data

Updates to ArchR based on user feedback to improve stability. Additionally, multi-omic functionality has been introduced.

Initial Release of ArchR