In previous discussions and on your documentation you mention you can use xpore postprocessing to "filter out those positions whose mod_assigment values are not in line with those of the majority in order to restrict ourselves with one modification type per kmer in the analysis."

From my understanding if I want to analyze m6a differential methylation I would use this and then filter for DRACH motifs. After that if I want to interpret direction of differential modification between treatments do I use "diff_mod_rate" column and if so, how do I interpret this?

Sorry if it is not clear what I am asking.

Kind regards,

Nic