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Commits on Jul 15, 2013
- committed
Andreas Prlic - committedAndreas Prlic
Commits on Mar 8, 2013
now using making sure to only pull lgpl code
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Commits on Mar 2, 2013
get pariwise alignment of protein sequences
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Commits on Nov 30, 2012
[maven-release-plugin] prepare for next development iteration
Show description for 6171169committed[maven-release-plugin] prepare release biojava-3.0.5
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Commits on Nov 28, 2012
adding another database type constant
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Commits on Nov 27, 2012
Proper fixation of the bug, adding INFINITY as a constant, and documentation
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Commits on Nov 26, 2012
correcting a bug that takes place at the end of the file (if you reach it ;) )
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Commits on Nov 24, 2012
just doc
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Commits on Nov 19, 2012
Changing return of parse() into List in stead of Vector
Show description for 376f82ecommittedAdding getBioSequences(boolean ignoreCase)
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Commits on Nov 10, 2012
should take distribution config from parent
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Commits on Nov 9, 2012
for testing of stockholm parser
Show description for 73503bdcommittedmaking sure this compiles with Maven 3.x
Show description for 456f7b0committednew unit test for stockholm file parsing
Show description for 3f87f06committedAdding test-scope dependency on forester to the alignment package
Show description for d4d9e82committedReplacing System.lineSeparator() calls with the backwards-compatible getProperty("line.separator")
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Commits on Nov 7, 2012
Changing parseFile(xxx) function set into parse(xxx) and adding parseNext(int)
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Commits on Nov 6, 2012
- committed
Added Stockholm Parser beta, and some test files.
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Commits on Oct 18, 2012
Refactor to use forester 1.005
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Commits on Jul 3, 2012
demo for how to load amino acid substitution matrices
Show description for 652cebbcommittedan example for how to align DNA
Show description for ea5b48ccommittedadding the cookbook example as a demo
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Commits on Jul 2, 2012
adding patch by Don Naki
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Commits on May 22, 2012
[maven-release-plugin] prepare for next development iteration
Show description for c3a9b6ccommitted[maven-release-plugin] prepare release biojava-3.0.4
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Commits on Mar 16, 2012
[maven-release-plugin] prepare for next development iteration
Show description for 80b45aacommitted[maven-release-plugin] prepare release biojava-3.0.3
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Commits on Mar 8, 2012
added sanity check to Alignments, throws IllegalArgumentException if compound sets mismatch (instead of just failing silently)
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Commits on Feb 24, 2012
unified indentation in pom.xml; added some Test cases for DNA Alignments
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Commits on Jan 10, 2012
fixing recursion
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Commits on Oct 8, 2011
Minor documentation changes
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Commits on Oct 6, 2011
new unit test for DNA alignments
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