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Machine Learning and Systems Biology Research Department

MLSB Department at the MPI of Biochemistry, Martinsried, Germany

152 followers
Germany
https://www.biochem.mpg.de/borgwardt

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TOGL TOGL Public

Topological Graph Neural Networks (ICLR 2022)

Python 128 28
SAT SAT Public

Official Pytorch code for Structure-Aware Transformer.

Python 266 40

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Showing 10 of 121 repositories

Gelato Public
Code and Data for the paper: "Gelato: Graph Edit Distance via Autoregressive Neural Combinatorial Optimization" (ICLR 2026)

BorgwardtLab/Gelato's past year of commit activity

Python 4 MIT 0 0 0 Updated Jun 8, 2026
rnaglib-experiments Public

BorgwardtLab/rnaglib-experiments's past year of commit activity

Python 4 0 0 0 Updated Jun 5, 2026
TEDBench Public
Protein Fold Classification at Scale: Benchmarking and Pretraining (ICML 2026 oral)

BorgwardtLab/TEDBench's past year of commit activity

Python 17 BSD-3-Clause 0 1 0 Updated May 24, 2026
CellPick Public
An interactive cell selection tool for spatial omics

BorgwardtLab/CellPick's past year of commit activity

Python 3 BSD-3-Clause 0 0 0 Updated May 22, 2026
polygraph-benchmark Public
Benchmarking framework for graph generative models (ICLR 2026)

BorgwardtLab/polygraph-benchmark's past year of commit activity

Python 10 BSD-3-Clause 0 0 0 Updated Apr 30, 2026
DeepEST Public

BorgwardtLab/DeepEST's past year of commit activity

Python 10 4 0 0 Updated Feb 19, 2026
ed_outcome_prediction_benchmark Public

BorgwardtLab/ed_outcome_prediction_benchmark's past year of commit activity

Python 0 BSD-3-Clause 0 0 0 Updated Feb 13, 2026
Human_scDVP_Analysis Public

BorgwardtLab/Human_scDVP_Analysis's past year of commit activity

Python 0 BSD-3-Clause 0 0 0 Updated Dec 30, 2025
bioverse Public

BorgwardtLab/bioverse's past year of commit activity

Python 1 BSD-3-Clause 0 0 0 Updated Dec 10, 2025
graph-kernels Public
Graph kernels

BorgwardtLab/graph-kernels's past year of commit activity

C++ 56 GPL-2.0 24 0 0 Updated Dec 3, 2025

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