Popular repositories Loading
-
horizontalTransfer
horizontalTransfer PublicCode used to infer and filter horizontal transfer events in eukaryotes. GPL Version 3 license.
-
L1-dynamics
L1-dynamics PublicSample code to accompany the L1 evolutionary dynamics across eukaryotes manuscript. Shows how to perform two independent extraction methods: iterative search using LASTZ on genomic data, versus tra…
-
regionalGenomeTurnover
regionalGenomeTurnover PublicScripts that were used in "Divergent genome evolution caused by regional variation in DNA gain and loss between human and mouse"
-
HTT_detection
HTT_detection PublicMethods for detection of horizontal transfer of transposable elements from genome sequences. GPL version 3 license.
-
Tuatara-paper
Tuatara-paper PublicContains the scripts used to analyse tuatara transposable elements, generate figures for tautara paper and infer phylogenies
-
Elephant-project
Elephant-project PublicContains the scripts used to convert BAM to BED, generate binary sequences and infer phylogenies.
C++ 1
Repositories
- HTT_detection Public
Methods for detection of horizontal transfer of transposable elements from genome sequences. GPL version 3 license.
- horizontalTransfer Public
Code used to infer and filter horizontal transfer events in eukaryotes. GPL Version 3 license.
- Tuatara-paper Public
Contains the scripts used to analyse tuatara transposable elements, generate figures for tautara paper and infer phylogenies
- regionalGenomeTurnover Public
Scripts that were used in "Divergent genome evolution caused by regional variation in DNA gain and loss between human and mouse"
- retrotransposonAccumulation Public
- Elephant-project Public
Contains the scripts used to convert BAM to BED, generate binary sequences and infer phylogenies.
- L1-dynamics Public
Sample code to accompany the L1 evolutionary dynamics across eukaryotes manuscript. Shows how to perform two independent extraction methods: iterative search using LASTZ on genomic data, versus translated nucleotide search of NCBI databases using TBLASTN. Subsequent analyses use programs such as MUSCLE, USEARCH, HMMER, etc.
People
This organization has no public members. You must be a member to see who’s a part of this organization.
Top languages
Loading…
Most used topics
Loading…