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UniSTS is a comprehensive database of sequence tagged sites (STSs)
derived from STS-based maps and other experiments.
STSs are defined by PCR primer pairs and are associated with additional
information such as genomic position, genes, and sequences.
Summary of Maps in UniSTS
Organism
Map name 1 Links2
Acacia mangium
butcher_2000
butcher_2000
33
ftp
Allium cepa
Havey_05
Onion Genetic Map
35
ftp
Antirrhinum majus
Schwarz-Sommer_10
intraspecific snapdragon
135
ftp
Antirrhinum majus x Antirrhinum molle
Schwarz-Sommer_03
2003 interspecific linkage map
1
ftp
Apis mellifera
Hunt
Hunt Honeybee Linkage Map 7_25_05
1
ftp Solignac_1700
Solignac Genetic Map, 1694 markers
1,622
ftp Solignac_3
Solignac Linkage Map (AmelMap3)
2,007
ftp
Arabidopsis lyrata
lyratap_beaulieu_07
petraea_x_lyrata
1
ftp
Arachis duranensis x Arachis stenosperma
SSR_05
diploid peanut, 2005, SSR
151
ftp
Avena sativa
AsXAw_00
Diploid Oat, AFLP
2
ftp
Avena strigosa x Avena wiestii
As_x_Aw_00
Diploid oat, AFLP
3
ftp
Beta vulgaris
McGrath_07
McGrath_07
23
ftp
Betula pendula
Pekkinen_06
2006 silver birch linkage map
17
ftp
Bombus terrestris
Stolle2
Bombus terrestris Linkage Map
303
ftp
Bos taurus
ILTX
5000 Rad Cattle RH Map, 2005 Release
3,396
ftp MARC
MARC Bovine Linkage Map
1,365
ftp
Brassica juncea
Panjabi_08
B. juncea Intron Polymorphism map
4
ftp
Brassica napus
BBSRC-SSR
N-o-61-9 SSR map
89
ftp N-fo-72-8
N-fo-72-8
5
ftp bnapus_bin
bnapus_bin
13
ftp piquemal_05
B. napus, piquemal_05
55
ftp
Brassica oleracea
A12xGD-206_2000
B. oleracea, A12xGD-206_2000
4
ftp Li_2003
Li_2003
11
ftp NxG-97_2000
B. oleracea, NxG-97_2000
4
ftp O_Integrated_2000
B. oleracea, Integrated_2000
5
ftp
Brassica rapa
choi_07
choi_07
4
ftp park_06
park_06
7
ftp reference_kr2009
reference_kr2009
4
ftp
Bubalus bubalis
RH
River buffalo (Bubalus Bubalis) radiation Hybrid map
796
ftp
Canis lupus familiaris
RHDF5000
Canine 1Mb RH Map
3,031
ftp
Capsicum annuum x Capsicum frutescens
F_x_A_03
Pepper-FA03
2
ftp
Carica papaya
Ming_07
Ming_07
691
ftp
Cocos nucifera
RIT1
Cameroon Red Dwarf x Rennell Island Tall-1
11
ftp RIT2
Cameroon Red Dwarf x Rennell Island Tall-2
18
ftp Riedel_2009
East African Tall x Rennell Island Tall, 2009
4
ftp
Corylus avellana
Mehlenbacher_2006R
Mehlenbacher, resistant parent
9
ftp
Cryptococcus neoformans
Cneo_B3501_B3502
Linkage map of Cryptococcus neoformans var neoformans serotype D
279
ftp
Cucumis melo
Gonzalo_2005
merged melon linkage maps
60
ftp
Cynara cardunculus var. scolymus
2006_Romanesco_C3
2006 Romanesco C3 genetic map
11
ftp 2009_Romanesco_C3
2009 Romensco C3 genetic map
45
ftp Altilis41
2009 Altilis 41 genetic map
25
ftp Spinso
2006 Spinoso genetic map
9
ftp
Danio rerio
GAT
Gates Haploid Panel Map
304
ftp HS
Heat Shock Diploid Cross Map
1,423
ftp LN54
Loeb/NIH/5000/4000 Map
3,366
ftp MGH
Boston MGH Cross Map
1,980
ftp MOP
Mother of Pearl Map
321
ftp T51
Goodfellow T51 Map
5,875
ftp ZMAP
Zebrafish Genome Integrated Map
8,351
ftp
Elaeis guineensis
Billotte_05
2005 oil palm microsatellite linkage map
231
ftp
Eleusine coracana
Devos_2007
finger millet 2007
31
ftp
Equus caballus
RH
Horse radiation hybrid map
3,813
ftp
Eucalyptus grandis
Grattapaglia_gr_06
Grattapaglia_gr_06
197
ftp
Eucalyptus grandis x Eucalyptus urophylla
Grattapaglia_06
eucalyptus_consensus
201
ftp
Eucalyptus urophylla
Grattapaglia_ur_06
Grattapaglia_ur_06
160
ftp
Felis catus
Genetic
Genetic map of the domestic cat
318
ftp Genetic2009
Cat genetic map 2009
529
ftp RH
Cat radiation hybrid map 2008
2,674
ftp
Fragaria vesca x Fragaria nubicola
FV_x_FN_2004
Fragaria vesca x Fragria nubicola 2004 genetic
35
ftp FV_x_FN_2006
Fragaria vesca x Fragria nubicola 2006 genetic
77
ftp
Gallus gallus
WUR
Wageningen University chicken linkage Map
960
ftp
Glycine max
2004_SSR
2004 Integrated Genetic Linkage Map
1,013
ftp Comp_03
Composite 2003
1,007
ftp Comp_99
Composite 1999
595
ftp Cregan_03
2003 Integrated Genetic Linkage Map
1,012
ftp
Helianthus annuus
Al-Chaarani_04
PAC2 x RHA266 RIL Al-Chaarani 2004
4
ftp Alfadil_07
PAC2 x RHA266 RIL Alfadil 2007
116
ftp Burke_02
cmsHA898 x Ann1238 Burke 2002
96
ftp Burke_04
Composite Burke 2004
265
ftp Gandhi_05
NMS373 x ANN1811 BC Gandhi 2005
62
ftp Hopi_x_ANN1238_2007
Hopi x ANN1238_Wills & Burke 2007
19
ftp Hu_06
RHA280 x RAH801 Hu 2006
398
ftp Kiani_07
PAC2 x RHA266 Kiani 2007b
135
ftp Lai_05
RHA280 x RHA801_RIL Lai 2005b
176
ftp PHA_x_PHB_03
PHA x PHB_RIL_Yu et al. 2003
233
ftp Tang_02
RHA280 x RHA801 RIL Tang 2002
390
ftp Tang_03
Composite Tang 2003
468
ftp Tang_06
RHA280 x RAH801 Tang 2006b
111
ftp ril_Yu_03
RHA280 x RHA801 RIL Yu 2003
389
ftp
Homo sapiens
GeneMap99-GB4
Human Transcript Map 99
48,938
ftp GeneMap99-GB4
Human Transcript Map 99
48,938
ftp Genethon
Genethon Human Linkage Map, 1995 release
5,264
ftp Marshfield
Marshfield human genetic Map
7,694
ftp NCBI RH
Computed integrated panel Map
23,699
ftp NHGRI-7
NHGRI chr 7 Physical Map
2,117
ftp Stanford-G3
Stanford G3 Map
7,149
ftp TNG
Stanford TNG RH Map
35,608
ftp WUSTL-X
WashU Chr. X STS Map
1,662
ftp Whitehead-RH
Whitehead RH Map, July 1997 release
14,627
ftp Whitehead-YAC
Whitehead STS Map, July 1997 release
10,449
ftp deCODE
deCODE high resolution genetic Map
5,012
ftp
Hordeum bulbosum
Hbulbosum_2001
H.bulbosum, PB1 x PB11
1
ftp
Hordeum vulgare
B_x_E_1997
Blenheim x E224/3
2
ftp Cons03
Barley Consensus 2003
113
ftp Cons95
Barley consensus
5
ftp Cons96
Barley consensus 2
5
ftp D_x_M
Barley, Dicktoo x Morex
1
ftp I_x_F_00
Barley, Igri x Franka
18
ftp I_x_F_03
Barley, Igri x Franka, SSR
9
ftp L_x_Hs_00
Barley, LxHs
232
ftp L_x_V_06
Barley, L94 x Vada 2006
78
ftp NABGMP00
Barley, HxT
2
ftp NABGMP03
North American Barley Genetic Mapping Project 2003
25
ftp NABGMP93
Barley, SxM
1
ftp OWB_04
Barley, OWB, 2004
45
ftp OWB_96
Barley, OWB
31
ftp P_x_N_95
Barley, PxN
4
ftp S_x_M_SSR
Barley, Steptoe x Morex, SSR
30
ftp T_x_E_2000
Barley, TxE
25
ftp
Lolium perenne
Armstead_02
2002 Integrated Genetic Map
2
ftp
Lotus japonicus
F_x_G
L. filicaulis x L. japonicus Gifu
144
ftp F_x_G_06
L. filicaulis X L. japonicus Gifu
153
ftp G_x_M
L. japonicus Gifu x L. japonicus MG-20
180
ftp G_x_M_06
L. japonicus Gifu X L. japonicus MG-20
184
ftp Lf_X_Lj_02
Lotus japonicus genetic map
45
ftp Lf_X_Lp_02
Lf_X_Lp_02
31
ftp kazusa_lotus
kazusa_lotus
778
ftp lj_composite_06
lj_composite
193
ftp lj_composite_06
lj_composite
193
ftp
Lupinus angustifolius
83A:476_x_P27255_2006
2006 83A:476xP27255
122
ftp
Macaca mulatta
RH
First Generation RH Map
793
ftp
Manihot esculenta
cassava_F_05
cassava_F_05
42
ftp cassava_M_05
cassava_M_05
22
ftp fregene_2006
fregene_2006
42
ftp
Medicago sativa
Julier_composite
Julier_composite
76
ftp cook_alfa_04
cook_alfa_04
58
ftp
Medicago truncatula
Davis04
Davis 2004 genetic
263
ftp Davis06
Davis 2006 genetic
514
ftp Minnesota04
Young(U.Minn)2004
515
ftp Minnesota06
Young(U.Minn)2006
555
ftp
Meleagris gallopavo
UMN
University of Minnesota Turkey Genetic Linkage Map
342
ftp
Mus musculus
MGI
Mouse Genome Database genetic Map
17,992
ftp WI/MRC-RH
Whitehead-MRC RH Mouse Map v12
13,813
ftp WI_GEN
Whitehead Mouse Genetic Map
6,518
ftp WI_YAC
Whitehead Mouse YAC Map
7,569
ftp
Musa acuminata
AFCAM_06
AFCAM 2006
20
ftp Borli_2009
Borli 2009
113
ftp
Nicotiana tabacum
Bindler_2007
Red Russian x Hicks Broad Leaf
278
ftp
Nicotiana tomentosiformis
Wu_2010
Nicotiana tomentosiformis diploid tobacco linkage map
289
ftp
Oryza sativa
JP_HD_00
Latest High-density Rice Genetic Map
53
ftp JP_HD_98
High-density Rice Genetic Map
53
ftp R
R
121
ftp RC00
RC00
17
ftp RC01
Cornell RFLP 2001
44
ftp RC94
Cornell RFLP 1994
10
ftp RD00
RD00
258
ftp RD01
Cornell SSR 2001
431
ftp RK98
KRGRP 1998
74
ftp RS98
RS98
66
ftp RW99
RW99
2
ftp
Ovis aries
CAB
CAB Ovine Linkage Map
877
ftp SM4.7
SheepMap4.7
1,210
ftp
Phaseolus vulgaris
Adam-Blondon94
Paris RFLP 1994
2
ftp Blair_03
Blair 2003 SSR
70
ftp Gepts98
Freyre 98
1
ftp
Pinus pinaster
ritter_02
ritter_02
2
ftp
Plasmodium falciparum
NIAID
NIAID Genetic Map
844
ftp
Populus trichocarpa
Cervera_01
Cervera_01
55
ftp Tuskan_04
Tuskan_04
78
ftp
Prunus armeniaca
Lito_2007
LxB 2007
153
ftp Valenciano_2002
GxV F1 2002
13
ftp Lito_2003
LxL F2 2003
11
ftp Lito_2007
LxB 2007
153
ftp Polonais_2004
Polonais 2004
26
ftp StarkEarlyOrange_2004
Stark Early Orange 2004
29
ftp Valenciano_2002
GxV F1 2002
13
ftp
Prunus dulcis
Ferragnes_2000
Ferragnes 2000
4
ftp Tuono_2000
Tuono 2000
5
ftp
Prunus dulcis x Prunus persica
Dirlewanger_2004
Garfi x Nemared 2003
124
ftp T_x_E_2003
Texas x Earlygold 2003
63
ftp
Prunus persica
P_x_F_2001
PxF peach x P.prunus BC1 2001
15
ftp P_x_F_2005
PxF peach x P.ferganensis BC1 2005
48
ftp
Prunus persica x Prunus dulcis
PMP1_2002
peach x almond 2002
4
ftp
Pyrus communis
Hayashi_Bartlett_2004
Bartlett Hayashi 2004
68
ftp Yamamoto_Bartlet_2002
Bartlett, 2002
43
ftp
Pyrus pyrifolia
Yamamoto_Housui_2002
Housui Hayashi 2004
53
ftp Yamamoto_Housui_2002
Housui Hayashi 2004
53
ftp
Quercus robur
Barreneche_98f
Barreneche female 1998
13
ftp Barreneche_98m
Barreneche male 1998
14
ftp
Rattus norvegicus
FHH X ACI
Rat FHH x ACI F2 intercross genetic Map
684
ftp MCW RH
Rat radiation hybrid Map
24,142
ftp SHRSP X BN
Rat SHRSP x BN F2 intercross genetic Map
2,016
ftp
Rosa chinensis
Dugo_2005
Rosa chinensis 2005 genetic
1
ftp
Rosa hybrid cultivar
Hibrand_2008
Rosa hybrid 2008 genetic
2
ftp
Rosa multiflora
93_1-117_2005
93/1-117 2005 genetic
15
ftp 93_1-119_2005
93/1-119 2005 genetic
15
ftp
Rubus idaeus
L_x_Gm_2006
Red Raspberry L x Gm 2006
48
ftp MJ_x_MO_2007
Red Raspberry MJ x MO 2007
18
ftp
Salix viminalis
K3_consensus
K3 consensus
10
ftp
Secale cereale
P87_x_P105_01
Rye, P87 x P105, update
12
ftp P87_x_P105_04
Rye, P87 x P105, 2004
13
ftp U_x_E_01
Rye, UC90 x E-line
1
ftp P87_x_P105_01
Rye, P87 x P105, update
12
ftp P87_x_P105_04
Rye, P87 x P105, 2004
13
ftp U_x_E_01
Rye, UC90 x E-line
1
ftp
Solanum lycopersicum
LEXPIMP_01
Tomato-EXPIMP 2001
7
ftp LEXPIMP_05
Tomato-EXPIMP 2005
76
ftp Ohyama_2009
2009 Kazusa SSR
153
ftp Shirasawa_SSR
2010 Kazusa SSR
1,460
ftp
Solanum melongena
Nunome_2009
Eggplant Nunome 2009
220
ftp
Solanum tuberosum
SCRI_98
SCRI 1998
22
ftp
Sorghum bicolor
Hart00
Bhattramakki et al 2000
144
ftp Hart99
Kong et al 2000
33
ftp Klein00
Klein 2000
43
ftp Klein04
Klein 2004
44
ftp
Sus scrofa
MARC
MARC Porcine Linkage Map
1,232
ftp
Theobroma cacao
2004_RGA_UPA402_x_UF676
2004 cocoa resistance gene linkage map
21
ftp CIRAD_00
CIRAD_00
21
ftp Flament_2001
Phytophthora palmivora resistance map
8
ftp Schnell_2003
2003 cocoa resistance gene linkage map
19
ftp
Tribolium castaneum
TCLM
Tribolium castaneum Linkage Map
14
ftp TCLM
Tribolium casteneum Linkage Map
428
ftp
Trifolium pratense
Con_2009
2009 red clover consensus
1,228
ftp SSR_2005
2005 red clover SSR
1,233
ftp
Triticum aestivum
AxF_03
Arina x Forno
150
ftp AxF_03
Arina x Forno
150
ftp CS_SQ1
Wheat, Chinese Spring x SQ1
236
ftp Comp04
2004 Composite
755
ftp Court_x_CSPSI_03
Wheat, Courtot x Chinese Spring, 2005
152
ftp FxO_99
Forno x Oberkulmer 1999
7
ftp FxO_99
Forno x Oberkulmer 1999
7
ftp Grandin_x_BR34
Wheat, Grandin x BR34, 2005
111
ftp Hayden_06
Wheat, Composite, 2007
489
ftp N_x_W_2008
Wheat, Nanda2419 x Wangshuibai
432
ftp RFLP_95
Synthetic-Opata Map
4
ftp SSR_00
Synthetic-Opata BARC SSR
374
ftp SSR_02
Synthetic-Opata 2002 SSR
61
ftp SSR_03
Wheat, Synthetic x Opata, BARC
410
ftp SSR_04
Consensus SSR
567
ftp SSR_98
Synthetic-Opata 1998 SSR
217
ftp Syn_x_Opata_03
Wheat, Synthetic x Opata, 2003
59
ftp
Triticum turgidum
JKxC_00
T.turgidum, JK x Cham1
23
ftp JK_x_C_2
T.turgidum, JK x Cham1,2
24
ftp JKxC_00
T.turgidum, JK x Cham1
23
ftp Kofa_x_UC1113
T.turgidum, Kofa x UC1113
215
ftp Langdon_x_G18-16
Langdon x G18-16
60
ftp M_x_M_ssr
T.turgidum, Messapia x dicoccoides SSR
74
ftp O_x_M
Omrabi5 x dicoccoides, QTL
93
ftp S_x_C
T.turgidum, Svevo x Ciccio
96
ftp
Turnera subulata x Turnera krapovickasii
Labonne_09
Turnera interspecific linkage map
4
ftp
Vigna angularis
Tsukuba_2005
azuki bean 2005
6
ftp
Vigna umbellata
Somta_2006
V. umbellata x V. nakashimae
4
ftp
Vitis vinifera
A1_C_SG
A1_C_SG
230
ftp A2_Riesling
A2_Riesling
105
ftp DG_C_Ch_x_Bi
DG_C_ChXBi
284
ftp DG_C_Ch_x_Bi
DG_C_ChXBi
284
ftp DG_F_Chardonnay
DG_F_Chardonnay
233
ftp DG_M_Bianca
DG_M_Bianca
250
ftp D_C_Apy
D_C_Apy
190
ftp D_F_2223
D_F_2223
147
ftp D_M_2121
D_M_2121
171
ftp Grenache_031220
Grenache_031220
174
ftp Integrated_07
Integrated_07
400
ftp Integrated_fw_07
Integrated_fw_07
250
ftp RGC_2007
resistance gene candidates 2007
398
ftp R_C_Ri_x_CS
R_C_RiXCS
165
ftp R_C_Ri_x_CS
R_C_RiXCS
165
ftp R_F_Riesling
R_F_Riesling
134
ftp R_M_CabernetS
R_M_CabernetS
141
ftp Riesling_031220
Riesling_031220
98
ftp SG_031220
SG_031220
212
ftp Syrah_031220
Syrah_031220
170
ftp
Zea mays
Bins
bins
1,070
ftp MW99
CU 99
3
ftp Gene_05
Genetic 2005
33
ftp IBM00
IBM 2000
290
ftp IBM02
IBM1
767
ftp IBM04
IBM2
1,107
ftp IDP_4_ISU
ISU IBM 4
2,220
ftp IDP_4_MMP
MMP IDP
2,401
ftp IDP_7
ISU IBM 7
3,661
ftp MITE_2000
MITE
2
ftp MW99
CU 99
3
ftp UMC98
UMC 98
19
ftp
1 Among markers mapped in the map, a subset of markers that are STSs and with available primer sequences were imported to UniSTS.2 Last Updated November 28, 2012
