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. 2009 Dec;26(12):2849-64.
doi: 10.1093/molbev/msp195. Epub 2009 Sep 1.

mtDNA data indicate a single origin for dogs south of Yangtze River, less than 16,300 years ago, from numerous wolves

Affiliations

Affiliation

  • 1 State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.

mtDNA data indicate a single origin for dogs south of Yangtze River, less than 16,300 years ago, from numerous wolves

Jun-Feng Pang et al. Mol Biol Evol. 2009 Dec.
. 2009 Dec;26(12):2849-64.
doi: 10.1093/molbev/msp195. Epub 2009 Sep 1.

Affiliation

  • 1 State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.

Abstract

There is no generally accepted picture of where, when, and how the domestic dog originated. Previous studies of mitochondrial DNA (mtDNA) have failed to establish the time and precise place of origin because of lack of phylogenetic resolution in the so far studied control region (CR), and inadequate sampling. We therefore analyzed entire mitochondrial genomes for 169 dogs to obtain maximal phylogenetic resolution and the CR for 1,543 dogs across the Old World for a comprehensive picture of geographical diversity. Hereby, a detailed picture of the origins of the dog can for the first time be suggested. We obtained evidence that the dog has a single origin in time and space and an estimation of the time of origin, number of founders, and approximate region, which also gives potential clues about the human culture involved. The analyses showed that dogs universally share a common homogenous gene pool containing 10 major haplogroups. However, the full range of genetic diversity, all 10 haplogroups, was found only in southeastern Asia south of Yangtze River, and diversity decreased following a gradient across Eurasia, through seven haplogroups in Central China and five in North China and Southwest (SW)Asia, down to only four haplogroups in Europe. The mean sequence distance to ancestral haplotypes indicates an origin 5,400-16,300 years ago (ya) from at least 51 female wolf founders. These results indicate that the domestic dog originated in southern China less than 16,300 ya, from several hundred wolves. The place and time coincide approximately with the origin of rice agriculture, suggesting that the dogs may have originated among sedentary hunter-gatherers or early farmers, and the numerous founders indicate that wolf taming was an important culture trait.

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Figures

F<sc>IG</sc>. 1.—

F IG . 1.—

Genetic relationships between the mtDNA…

F IG . 1.—

Genetic relationships between the mtDNA CR sequences (582 bp). ( a ) ML-evaluated…

FIG. 1.—
Genetic relationships between the mtDNA CR sequences (582 bp). (a) ML-evaluated NJ tree for the dog (unlabeled) and wolf (filled square) haplotypes, rooted by coyote (Coy) sequences (branch length reduced by 55%). The six main phylogenetic clades (A–F) of dog haplotypes are indicated. The geographical origin of wolf samples are for the wolf haplotypes (filled squares) from top to bottom: Mongolia (1 individual); China (1); Mongolia (1); Afghanistan (5); Romania (1); China (1); Yugoslavia (4); Canada (1); China (1); China (1); Spain (1); Spain (1); Sweden (1); Saudi Arabia (1); China (4); China (1); China (1) and Mongolia (1); China (2); China (1); Mongolia (2); Yugoslavia (3); Russia (1); Saudi Arabia (1); Mongolia (2). (b) MS networks showing the relationships between the haplotypes in dog clades A, B, and C, and the representation of the haplotypes in different geographical regions. The haplotypes are symbolized by circles (colored or white) and are separated by one substitutional step (ignoring indels); black dots are hypothetical intermediates. The 14 “universally occurring” haplotypes (UTs) are indicated with bold lining. The representation of haplotypes in the geographical regions is shown by the color and size of the circles. A colored circle indicates the presence of the haplotype (blue for haplotypes shared with other regions and orange for haplotypes unique to the region); white denotes nonrepresented haplotypes. The size of the circle is proportional to the frequency of the haplotype in the region. To simplify the figure, the circle size is reduced for the most frequent haplotypes for East Asia (eight most frequent haplotypes reduced by 30%) and West (most frequent haplotype reduced by 50%, next seven most frequent haplotypes by 30%). For definition of geographical regions, see Note to table 1. (The region denoted “Sib, Mon, Kor, Jap” represents Siberia, Mongolia, Korea, and Japan.) (c) The CR haplotypes chosen for analysis of the mtDNA genome, indicated by color. The different colors refer to the subclades (six for clade A, two each for B and C) subsequently identified (see fig. 2a). Clade A: subclade a1 orange, a2 green, a3 red (upper part of network), a4 red (lower part of network), a5 blue, and a6 yellow. Clade B: subclades b1 orange, b2 green. Clade C: subclades c1 green, c2 orange.
F<sc>IG</sc>. 2.—

F IG . 2.—

Genetic relationships between the mtDNA…

F IG . 2.—

Genetic relationships between the mtDNA genome sequences (16,195 bp). ( a ) ML…

FIG. 2.—
Genetic relationships between the mtDNA genome sequences (16,195 bp). (a) ML tree for dog and wolf sequences, rooted by coyote sequences (branch length reduced by 87%). The sample identity for the dogs is given as the name of the CR haplotype (purple indicates that the CR haplotype is a UT [“universally occurring haplotype”]), and an individual number for samples with identical CR haplotype. The geographical origin of the dog samples is given in figure 2b. “W” indicates wolf (geographical origin from top to bottom: China, Saudi Arabia, Saudi Arabia, Sweden, Canada, Spain, China, and Russia) and “Coy” coyote. Dog clades A, B, and C (marked by *) were supported by bootstrap values ≥92% and Bayesian values = 100%, and their subclades a1–a6, b1–b2, and c1–c2, by bootstrap values ≥87% and Bayesian values ≥99%. (b) MS networks showing the relationships between the haplotypes in dog clades A, B, and C. The haplotypes are represented by ellipses (UTs indicated with bold lining) and are separated by the number of substitutions indicated next to the connecting lines, no number indicating a single substitution. The sample identity is the same as in figure 2a (identical samples are given within the same ellipse). Colors indicate geographical origin: Red, Eastern Asia (China, Southeast Asia, Japan, Korea, Mongolia, and Siberia); Blue, Europe; Green, SW Asia; Purple, Africa; and Yellow, India.
F<sc>IG</sc>. 3.—

F IG . 3.—

Genetic diversity for CR data,…

F IG . 3.—

Genetic diversity for CR data, among regions across the Old World. ( a

FIG. 3.—
Genetic diversity for CR data, among regions across the Old World. (a) Genetic diversity across the Old World. Pie diagrams show the proportion of individuals having clades A (blue), B (red), and C (yellow). Boxes show 1) UT: the proportion of individuals having one of the 14 universally occurring haplotypes, 2) UTd: the proportion having a UT-derived haplotype, that is, a haplotype that is either a UT or differs by a single substitution from a UT, and 3) SC: the representation of the 6 nonuniversal (of the totally 10) subclades of clades A, B, and C. (Eur N/S cont—Europe North/South continent; N/C China—North/Central China [north of Yellow River/between Yellow and Yangtze River]; ASY—Asia South of Yangtze River). (b) Genetic diversity in southeastern Asia. Boxes show UT, UTd, and SC as defined in figure 3a. Sampled regions are indicated by color. LHS—Liaoning, Hebei, and Shanxi; GG—Guanxi and Guangdong. SE Asia—Vietnam, Thailand, and Cambodia. Tibet includes samples from Qinghai and Nepal.

References

    1. Angleby H, Savolainen P. A study of the forensic usefulness of the mitochondrial DNA variation among and within populations, breeds and types of domestic dogs. Forensic Sci Int. 2005;154:99–110. - PubMed
    1. Bellwood P. First farmers: the origins of agricultural societies. United Kingdom: Blackwell Publishing; 2005.
    1. Boitani L. Wolf management in intensively used areas of Italy. In: Parrington FH, Paquet PC, editors. Wolves of the world. Park Ridge (NJ): Noyes Publications; 1982. pp. 158–172.
    1. Boyko AR, Boyko RH, Boyko CM, et al. (15 co-authors) Complex population structure in African village dogs and its implication for inferring dog domestication history. Proc Natl Acad Sci USA. 2009;106:13903–13908. - PMC - PubMed
    1. Chaix L. A preboreal dog from the northern Alps (Savoie, France) In: Crockford SJ, editor. Dogs through time: an archaeological perspective. British archaeological reports International Series 889, Oxford, England 2000. Oakville (CT): David Brown Book Company; 2000. pp. 49–59.

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