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yaoxkkkkk/SecretProScan

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pipeline

1. Dependent Software

2. What to input

  • If the primary transcript's protein sequence FASTA file is provided, add the protein file.
  • If the primary transcript's protein sequence FASTA file is not provided, add the genome file and the annotation file.

gzipped files are supported.

3. What to output

  • Signal peptides prediction results from three softwares
  • Final phytocytokine candidates

4. Usage

snakemake \
	--snakefile SecProScan.smk \
	--use-conda \
	--use-singularity \
	--rerun-incomplete \
	--nolock

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Secret protein scaning pipeline (previously used for phytocytokine prediction).

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