Openfish is a submodule used in slorado for performing CRF-CTC decoding. The CPU implementation written in C was adopted from the C++ beamsearch implementation in ONT Dorado which is licensed under the Oxford Nanopore Technologies PLC. Public License Version 1.0. Then based on that C implementation, we implemented the GPU version for NVIDIA GPUs using CUDA C and for AMD GPUs using HIP C.

This is in early stages of development and thus the API not at all stable (and thus not documented).

For CPU:

make debug=1
# fast model
scripts/cpu_quick_run.sh fast
# hac model
scripts/cpu_quick_run.sh hac
# sup model
scripts/cpu_quick_run.sh sup

For GPU:

# cuda
make cuda=1 debug=1

# rocm
make rocm=1 debug=1

# testing
# fast model
scripts/gpu_quick_run.sh fast
# hac model
scripts/gpu_quick_run.sh hac
# sup model
scripts/gpu_quick_run.sh sup