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Summary:
The PR upgrades the trunk CLI version, some linters (eslint, pmd), and the trunk-io/configs plugin. It also enables java runtime.

Root Cause Analysis:
The test failures are labeled as flaky, and I was unable to retrieve any test logs. Given the changes in this PR, the potential causes of flakiness are:

1. Linter Version Updates: The updates to eslint and pmd could introduce new rules or change existing rule behavior, leading to different linting results. This could cause tests that rely on specific code formatting or structure to fail intermittently.
2. Trunk CLI Version Update: The trunk CLI update could have subtle changes in how it executes linters or manages the environment, leading to timing-related issues or resource contention that manifests as flaky tests.
3. New Java Runtime: Enabling the Java runtime could potentially introduce conflicts or dependencies that affect other tests, especially if they interact with the file system or environment variables.
4. Underlying Infrastructure Issues: The CI environment itself might be experiencing temporary issues (network delays, resource exhaustion) that cause tests to fail sporadically.

Resolution Plan:

Since the root cause is difficult to determine without specific test logs, I recommend the following steps:

1. Re-run the tests: The first step is always to re-run the tests to see if the failures persist. Flaky tests often pass on subsequent runs.
2. Examine the test results more closely: If the tests continue to fail, try to capture the test logs.
3. Investigate Linter Changes: Examine the changelogs for eslint and pmd to identify any changes that could affect the codebase. If necessary, update the code to comply with the new linter rules or adjust the linter configurations.
4. Monitor Resource Usage: Monitor the CI environment's resource usage (CPU, memory, disk I/O) to identify any bottlenecks that could be contributing to the flakiness.
5. Isolate the Java Runtime: If the flakiness seems related to the Java runtime, try disabling it temporarily to see if the tests become more stable.

If the problem persists, it may be necessary to mark the tests as flaky or investigate more deeply into the underlying infrastructure.

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