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Commits on Aug 4, 2024

• [doc] fix documentation for --input-alphabet

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• [misc] update citation and copyright

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Commits on Nov 26, 2023

• [fix] exception handling of the sharg-parser

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Commits on Jul 12, 2023

• [misc] deactivate BIFM by default

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Commits on Apr 15, 2023

• [misc] resolve many TODOs, get rid of regex parsing

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Commits on Apr 3, 2023

• [feature] query preloading

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Commits on Mar 21, 2023

• add searchbs and mkindexbs as proper commands

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Commits on Dec 6, 2022

• [misc] apply review comments and some cleanup

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Commits on Nov 30, 2022

• pull async_input_buffer into lambda + minor stuff

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Commits on Nov 29, 2022

• seqan3 → biocpp step1

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Commits on Aug 17, 2022

• [nop] reformat

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Commits on Aug 16, 2022

• [feature] iterative/pre-search

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Commits on Jul 21, 2022

• Remove serial mode

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Commits on Jul 15, 2022

• [Feature] Add pre-filter for low seed complexity in nucleotide mode

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Commits on May 13, 2022

• re-introduce half-exact-seeding and adapt to new SeqAn3

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Commits on Jun 18, 2021

• [INFRA] Update seqan3 submodule to 3.0.3

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Commits on Apr 11, 2021

• [MISC] put writing of record(s) into separate function

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Commits on Mar 31, 2021

• [Feature] Add second bisulfite index

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Commits on Apr 16, 2020

• Add bisulfite mode

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Commits on Jan 30, 2020

• [FEATURE] stream over query file

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Commits on Jan 28, 2020

• [MISC] update copyright

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• [MISC] lot's of cleanup

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• [MISC] create multiple translation units [step1]

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