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Commits on Jan 11, 2019

• update copyright year

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  40f5829

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Commits on Oct 18, 2017

• [API] refactoring almost done

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  e906eb7

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Commits on Oct 13, 2017

• [API] first big move-around and rename; single binary :+1:

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  5daaed2

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Commits on Jun 19, 2017

• [FIX] only catch exceptions in release mode

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  5c29d90

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Commits on Jun 16, 2017

• [INTERNAL] better exception handling

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  083efb8

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Commits on Jun 14, 2017

• [INTERNAL] hide microbenchmarking behind extra compile flag

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  62df329

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Commits on Jun 13, 2017

• [API] use super+ultra-blocks in FM; don't use prefix-sums for uni-dir.

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  99e9486

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Commits on Feb 16, 2017

• [FEATURE] initial support for memory checks

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  2f1ad13

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Commits on Jan 24, 2017

• [INTERNAL] larger batches for SIMD, benefit still unclear

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  d22e095

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Commits on Jan 6, 2017

• [INTERNAL] resolve merge-conflict after merging master

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  4196218

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• [INTERNAL] update source code copyright headers

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  96c2490

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Commits on Jan 4, 2017

• [FIX] fix search with 0 errors

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  15d7632

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Commits on Jan 3, 2017

• [INTERNAL,CLI] unify codepaths; change default options; sd==0 still tobefixed

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  43f5948

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Commits on Nov 29, 2016

• [FEATURE] taxonomic binning works (beta)

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  2480541

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Commits on Oct 27, 2016

• [FEATURE] second part of staxid loading (only printing is missing)

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  e4a3077

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Commits on Oct 13, 2016

• [FEATURE] large commit finally bringing bidirectional FM

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  d336238

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Commits on Aug 16, 2016

• [INTERNAL] cleanup and deactivate AVX2-SIMD in auto-detection

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  c66be7f

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• [API] change index option format; validate in search mode

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  ea3a895

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Commits on Aug 15, 2016

• [API] change indexing format and remove seg support

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  0e726b9

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Commits on Aug 11, 2016

• [INTERFACE] change default options, improve diagnostics

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  6dc83ab

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Commits on Aug 10, 2016

• [FEATURE] further work on SIMD and full-dp

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  52d18ce

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Commits on Aug 8, 2016

• [FEATURE] preliminary SIMD-support for alignments

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  5b33efd

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Commits on Jul 27, 2016

• Merge branch 'master' into lambda-next

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  8c3d1cd

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• [LEGAL] update license information in the src

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  8640508

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Commits on Jul 15, 2016

• [FEATURE] baseline for adaptive seeding is there

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  3a388e0

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• [FEATURE] further work on adaptive seeding

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  96fcf68

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• [FEATURE] first work on adaptive seeding

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  f50d910

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Commits on May 18, 2016

• [INTERNAL] make SimpleScore only available to BLASTN, further reducing compile time and binary size

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  ba958f6

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Commits on May 12, 2016

• [INTERNAL] reduce the compile time and binary size further

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  44ccd06

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Commits on May 10, 2016

• [FEATURE] dynamic scoring final commit; cleanup

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  efc1dce

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• [INTERNAL] always use dynamic matrix

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  1ada9c1

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Commits on May 6, 2016

• [INTERNAL] use score matrix with runtime selection [need to debug still]

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  6f64ba2

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Commits on Apr 20, 2016

• [FIX] fix handling of longer query sequences; do length checking at startup

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  32d3358

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Commits on Jan 8, 2016

• [INTERNAL] minor cleanup

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  5fcc31f

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• [INTERNAL] reduce header-interdependencies

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  900caf1

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