A modest set of dev container Features features useful for authoring and testing Nextflow pipelines
This repository contains a collection of two Features - nextflow and nf-test. Each sub-section below shows a sample devcontainer.json alongside example usage of the Feature. At present, there are no options available for the nextflow feature, so the empty object is provided after the feature ID:
Installs Nextflow and prerequisites (Java)
$ nextflow -version
N E X T F L O W
version 22.10.4 build 5836
created 09-12-2022 09:58 UTC (04:58 EDT)
cite doi:10.1038/nbt.3820
http://nextflow.ioInstalls nf-test
{
"image": "mcr.microsoft.com/devcontainers/base:ubuntu",
"features": {
"ghcr.io/robsyme/features/nf-test:1": {}
}
}$ nf-test version
🚀 nf-test 0.7.1
https://code.askimed.com/nf-test
(c) 2021 - 2022 Lukas Forer and Sebastian Schoenherr
Nextflow Runtime:
N E X T F L O W
version 22.10.4 build 5836
created 09-12-2022 09:58 UTC (04:58 EDT)
cite doi:10.1038/nbt.3820
http://nextflow.io
{ "image": "mcr.microsoft.com/devcontainers/base:ubuntu", "features": { "ghcr.io/robsyme/features/nextflow:1": {} } }