PipeCraft2 is a user-friendly GUI software for metabarcoding data analysis. It provides:

• Ready-to-run pipelines for common metabarcoding workflows
• Individual analysis modules for custom workflows
• Integration with popular bioinformatics tools

📥 Download Latest Release (v1.1.0)

📚 User Guide

Pre-built Docker images available on DockerHub.

📚 Developer Guide

• NodeJS (make sure to install build tools on Windows, or build-essential on Ubuntu)
• Yarn package manager
• Docker
• Git

# Clone the repository
git clone https://github.com/pipecraft2/pipecraft
cd pipecraft

# Install dependencies and setup PipeCraft
yarn run install_pipe

# Start PipeCraft in development mode
yarn electron:serve