Add differential abundance test and plots#489
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jairideout
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Feb 8, 2024
Added ANCOM differential abundance test and faceted boxplots of significantly different taxa abundances across groups. - Test results are generated via `SampleCollection.differential_abundance()` (also available on OCX dataframes) - Plots are generated via `plot()` method on test results object - Multiple metadata grouping variables are supported (e.g. secondary, tertiary, ...) Closes DEV-9176
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Description
Added ANCOM differential abundance test and faceted boxplots of significantly different taxa abundances across groups.
SampleCollection.differential_abundance()(also available on OCX dataframes)plot()method on test results objectCloses DEV-9176
Related PRs
TODOs
group_bydata and raise a warning about the number of samples filtered