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Getting error in the GTDB step.

Status: Open.

#182 In nasa/GeneLab_Data_Processing;

· ankurnaqib opened on Oct 17, 2025

Error while setting up NF_MGIllumina_1.0.0

Status: Open.

#179 In nasa/GeneLab_Data_Processing;

· ankurnaqib opened on Oct 5, 2025

[bulkRNASeq] NF_RCP 2.0.0 - Custom genomes are limited to organisms found in reference_table

Status: Open.

#157 In nasa/GeneLab_Data_Processing;

· bnovak32 opened on May 23, 2025

[bulkRNASeq] NF_RCP 2.0.0 - post-processing fails after with user-provided runsheet_path

Status: Open.

#156 In nasa/GeneLab_Data_Processing;

· bnovak32 opened on May 23, 2025

[Amplicon Illumina] Issue with datasets that have multiple assays of the same target

Status: Open.

#149 In nasa/GeneLab_Data_Processing;

· jihanyehia opened on Apr 28, 2025

[Microarray] Add option to skip DE step during processing

Status: Open.

#104 In nasa/GeneLab_Data_Processing;

· cyouh95 opened on Jul 15, 2024

[Microarray Affymetrix] Processed data protocol

Status: Open.

#98 In nasa/GeneLab_Data_Processing;

· cyouh95 opened on Jun 7, 2024

[BulkRNASeq] Combine MultiQC reports

Status: Open.

#83 In nasa/GeneLab_Data_Processing;

· cyouh95 opened on May 15, 2024

[Metagenomics Illumina] Some datasets have too many files in the MAGs and bins folders

Status: Open.

#76 In nasa/GeneLab_Data_Processing;

· bnovak32 opened on Apr 5, 2024

ENSEMBL annotations not populating correctly

Status: Open.

#43 In nasa/GeneLab_Data_Processing;

· carnold-sjsu opened on Oct 9, 2023

[BulkRNASeq] Update default publish output directory when processing GLDS data

Status: Open.

#40 In nasa/GeneLab_Data_Processing;

· J-81 opened on Sep 2, 2023

[BulkRNASeq] Handle cases where distinct group names resolve to the same R safe name

Status: Open.

#39 In nasa/GeneLab_Data_Processing;

· J-81 opened on Sep 2, 2023