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ENH: Added FuncNorm and PiecewiseNorm classes in colors #7294

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2d90c5a
Added ArbitaryNorm and RootNorm classes in colors, as well as example…
Oct 17, 2016
57aad3d
PEP8 formatting on examples, plotting using the object oriented appro…
Oct 18, 2016
f818aff
Added title/description to the examples
Oct 18, 2016
ffe1b9d
Class attributes are now hidden
Oct 18, 2016
1d22b90
Major update: complete refactorization of code. A much more powerful …
Oct 19, 2016
b5801ea
Corrected lambda function syntax that was not compatible with python …
Oct 19, 2016
e93d82d
Added FuncNorm: now everything inherits from this. Changed the name o…
Oct 20, 2016
3749b0a
Forgot to uncomment an import
Oct 20, 2016
de62491
Improved the auto-tick feature, and corrected some pep8 issues
Oct 20, 2016
d148756
Improved examples, created a new file for generating sample data.'
alvarosg Oct 22, 2016
5373a98
Corrected a double line, and removed a comment
alvarosg Oct 22, 2016
13edeab
Tests for FuncNorm added, and bug corrected in FuncNorm
alvarosg Oct 22, 2016
21d5cd0
Added compatibility for python 3 string check, added tests for Piecew…
alvarosg Oct 22, 2016
d359a4e
Added tests on all classes, including all public methods
alvarosg Oct 22, 2016
4622829
Change type of arrays in tests from int to float
alvarosg Oct 22, 2016
30ff404
Corrected wrong `super()` for RootNorm
alvarosg Oct 22, 2016
df835cb
Solve problem with implicit int to float casting that was not working…
alvarosg Oct 22, 2016
dfaa0f8
Added documentation in the numpydoc format
alvarosg Oct 23, 2016
a386395
Improve style in the examples. Corrected intending problem in the doc…
alvarosg Oct 23, 2016
b9dafb0
Added example in `FuncNorm` docstring
alvarosg Oct 23, 2016
d10be73
Finished with the examples in the docstrings
alvarosg Oct 24, 2016
c85a14c
Implemented clipping behavoir. Refactored _func_parser
alvarosg Oct 26, 2016
7597ddd
It now allows some string functions with parameters. Added a test for…
alvarosg Oct 28, 2016
7fce503
Forgot to add a file...
alvarosg Oct 28, 2016
bcd7dd0
Forgot to add another file...
alvarosg Oct 28, 2016
a71e1e9
Improved tests, documentation, and exceptions
alvarosg Oct 31, 2016
33f57d1
Removed test_colors.py from __init__.py after including parametrize
alvarosg Oct 31, 2016
9687173
Moved the string function parser to its own class in cbook. Added tes…
alvarosg Nov 1, 2016
46395aa
Improved documentation
Nov 2, 2016
63dab61
Added new example
Nov 2, 2016
8abf2c2
Added example for PiecewiseNorm, and MirrorPiecewiseNorm. String in t…
alvarosg Nov 3, 2016
b4ecdb2
Removed sampledata.py no longer necessary, and changed examples in do…
alvarosg Nov 3, 2016
42007ee
Added examples for MirrorRootNorm and RootNorm
alvarosg Nov 3, 2016
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Added new example
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alvarosg committed Nov 2, 2016
commit 63dab61f6a0a4398c8eeaef7960feb96baf9e8ea
Original file line number Diff line number Diff line change
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"""
=====================================================================
Examples of normalization using :class:`~matplotlib.colors.FuncNorm`
=====================================================================

This is an example on how to perform a normalization using an arbitrary
function with :class:`~matplotlib.colors.FuncNorm`. A logarithm normalization
and a square root normalization will be use as examples.

"""

import matplotlib.cm as cm
import matplotlib.colors as colors
import matplotlib.pyplot as plt

import numpy as np


def main():
fig, ((ax11, ax12),
(ax21, ax22),
(ax31, ax32)) = plt.subplots(3, 2, gridspec_kw={
'width_ratios': [1, 2]}, figsize=plt.figaspect(0.6))

cax = make_plot(None, 'Regular linear scale', fig, ax11, ax12)
fig.colorbar(cax, format='%.3g', ax=ax12)

# Example of logarithm normalization using FuncNorm
norm = colors.FuncNorm(f=np.log10,
finv=lambda x: 10.**(x), vmin=0.01)
cax = make_plot(norm, 'Log normalization using FuncNorm', fig, ax21, ax22)
fig.colorbar(cax, format='%.3g', ticks=cax.norm.ticks(5), ax=ax22)
# The same can be achieved with
# norm = colors.FuncNorm(f='log10', vmin=0.01)

# Example of root normalization using FuncNorm
norm = colors.FuncNorm(f=lambda x: x**0.5,
finv=lambda x: x**2, vmin=0.0)
cax = make_plot(norm, 'Root normalization using FuncNorm', fig, ax31, ax32)
fig.colorbar(cax, format='%.3g', ticks=cax.norm.ticks(5), ax=ax32)
# The same can be achieved with
# norm = colors.FuncNorm(f='sqrt', vmin=0.0)
# or with
# norm = colors.FuncNorm(f='root{2}', vmin=0.)

fig.subplots_adjust(hspace=0.4, wspace=0.15)
plt.show()


def make_plot(norm, label, fig, ax1, ax2):
X, Y, data = get_data()
cax = ax2.imshow(data, cmap=cm.gray, norm=norm)

d_values = np.linspace(cax.norm.vmin, cax.norm.vmax, 100)
cm_values = cax.norm(d_values)
ax1.plot(d_values, cm_values)
ax1.set_xlabel('Data values')
ax1.set_ylabel('Colormap values')
ax2.set_title(label)
ax2.axes.get_xaxis().set_ticks([])
ax2.axes.get_yaxis().set_ticks([])
return cax


def get_data(_cache=[]):
if len(_cache) > 0:
return _cache[0]
x = np.linspace(0, 1, 300)
y = np.linspace(-1, 1, 90)
X, Y = np.meshgrid(x, y)

data = np.zeros(X.shape)

def gauss2d(x, y, a0, x0, y0, wx, wy):
return a0 * np.exp(-(x - x0)**2 / wx**2 - (y - y0)**2 / wy**2)
N = 15
for x in np.linspace(0., 1, N):
data += gauss2d(X, Y, x, x, 0, 0.25/N, 0.25)

data = data - data.min()
data = data / data.max()
_cache.append((X, Y, data))

return _cache[0]

main()
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