Closed
Description
@timhoffm suggested in #3919 (comment) that we make a gallery example for plotting X Y Z planar slices through a volume.
His result and its code:
import matplotlib.pyplot as plt
import numpy as np
def plot_quadrants(ax, array, fixed_coord, cmap):
"""For a given 3d *array* plot a plane with *fixed_coord*, using four individual quadrants."""
nx, ny, nz = array.shape
index = {
'x': (nx//2, slice(None), slice(None)),
'y': (slice(None), ny//2, slice(None)),
'z': (slice(None), slice(None), nz//2),
}[fixed_coord]
plane_data = array[index]
n0, n1 = plane_data.shape
quadrants = [
plane_data[:n0//2, :n1//2],
plane_data[:n0//2, n1//2:],
plane_data[n0//2:, :n1//2],
plane_data[n0//2:, n1//2:]
]
min_val = array.min()
max_val = array.max()
cmap = plt.get_cmap(cmap)
for i, quadrant in enumerate(quadrants):
facecolors = cmap((quadrant - min_val) / (max_val-min_val))
if fixed_coord == 'x':
Y, Z = np.mgrid[0:ny//2, 0:nz//2]
X = nx//2 * np.ones_like(Y)
Y_offset = (i // 2) * ny//2
Z_offset = (i % 2) * nz//2
ax.plot_surface(X, Y + Y_offset, Z + Z_offset, rstride=1, cstride=1, facecolors=facecolors, shade=False)
elif fixed_coord == 'y':
X, Z = np.mgrid[0:nx//2, 0:nz//2]
Y = ny//2 * np.ones_like(X)
X_offset = (i // 2) * nx//2
Z_offset = (i % 2) * nz//2
ax.plot_surface(X + X_offset, Y, Z + Z_offset, rstride=1, cstride=1, facecolors=facecolors, shade=False)
elif fixed_coord == 'z':
X, Y = np.mgrid[0:nx//2, 0:ny//2]
Z = nz//2 * np.ones_like(X)
X_offset = (i // 2) * nx//2
Y_offset = (i % 2) * ny//2
ax.plot_surface(X + X_offset, Y + Y_offset, Z, rstride=1, cstride=1, facecolors=facecolors, shade=False)
def figure_3D_array_slices(array, cmap=None):
"""Plot a 3d array using three intersecting centered planes."""
fig = plt.figure()
ax = fig.add_subplot(projection='3d')
ax.set_box_aspect(array.shape)
plot_quadrants(ax, array, 'x', cmap=cmap)
plot_quadrants(ax, array, 'y', cmap=cmap)
plot_quadrants(ax, array, 'z', cmap=cmap)
return fig, ax
nx, ny, nz = 70, 100, 50
r_square = (np.mgrid[-1:1:1j*nx, -1:1:1j*ny, -1:1:1j*nz]**2).sum(0)
figure_3D_array_slices(r_square, cmap='viridis_r')
plt.show()
timhoffm