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matchms

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matchms matchms Public

Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.

Python 242 75
ms2deepscore ms2deepscore Public

Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity

Jupyter Notebook 71 30
matchmsextras matchmsextras Public

additional network analysis functions for matchms

Python 5 2
sparsestack sparsestack Public

Memory efficient stack of multiple 2D sparse arrays.

Python 4 5
notebooks notebooks Public archive

Jupyter notebook with matchms tutorial.

Jupyter Notebook 2 1
matchms-docs matchms-docs Public

User documentation and tutorial material for matchms

Jupyter Notebook 2

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Showing 10 of 10 repositories

matchms Public
Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.

matchms/matchms’s past year of commit activity

Python 242 Apache-2.0 75 24 12 Updated Dec 16, 2025
ms2deepscore Public
Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity

matchms/ms2deepscore’s past year of commit activity

Jupyter Notebook 71 Apache-2.0 30 7 (1 issue needs help) 6 Updated Dec 5, 2025
graphconstructor Public
Construction of graphs from similarity or distance metrics.

matchms/graphconstructor’s past year of commit activity

Python 1 MIT 0 4 0 Updated Dec 2, 2025
sparsestack Public
Memory efficient stack of multiple 2D sparse arrays.

matchms/sparsestack’s past year of commit activity

Python 4 MIT 5 6 2 Updated May 26, 2025
similarity-graph-generator Public
Generation and processing of a graph from pairwise similarity measures.

matchms/similarity-graph-generator’s past year of commit activity

Jupyter Notebook 1 MIT 0 0 0 Updated Feb 11, 2025
matchms-docs Public
User documentation and tutorial material for matchms

matchms/matchms-docs’s past year of commit activity

Jupyter Notebook 2 0 1 0 Updated Jun 13, 2024
matchmsextras Public
additional network analysis functions for matchms

matchms/matchmsextras’s past year of commit activity

Python 5 Apache-2.0 2 6 2 Updated Aug 22, 2023
matchms-backup Public archive Forked from iomega/Spec2Vec_prototyping
Python library for fuzzy comparison of mass spectrum data and other Python objects

matchms/matchms-backup’s past year of commit activity

Python 0 Apache-2.0 4 0 0 Updated May 20, 2020
old-iomega-spec2vec Public archive
unrefactored spec2vec code from iomega org

matchms/old-iomega-spec2vec’s past year of commit activity

Python 0 Apache-2.0 1 0 0 Updated Apr 11, 2020
notebooks Public archive
Jupyter notebook with matchms tutorial.

matchms/notebooks’s past year of commit activity

Jupyter Notebook 2 Apache-2.0 1 0 0 Updated Apr 6, 2020

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