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@markovmodel

Markov model

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  1. PyEMMA PyEMMA Public archive

    đźš‚ Python API for Emma's Markov Model Algorithms đźš‚

    Python 325 122

  2. pyemma_tutorials pyemma_tutorials Public

    How to analyze molecular dynamics data with PyEMMA

    Jupyter Notebook 75 35

  3. molPX molPX Public

    IPython API to visualize MD-trajectories along projected trajectories inside a Jupyter notebook

    Python 42 2

  4. msmtools msmtools Public

    Tools for estimating and analyzing Markov state models

    Python 41 27

  5. thermotools thermotools Public

    Winter is coming...

    Python 12 5

  6. deeptime deeptime Public

    Deep learning meets molecular dynamics.

    Jupyter Notebook 178 40

Repositories

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Showing 10 of 34 repositories
  • adaptivemd Public

    A python framework to run adaptive Markov state model (MSM) simulation on HPC resources

    markovmodel/adaptivemd’s past year of commit activity
    Python 18 LGPL-2.1 8 17 3 Updated Apr 8, 2024
  • mdshare Public

    Get access to our MD data files.

    markovmodel/mdshare’s past year of commit activity
    Python 29 LGPL-3.0 6 4 1 Updated Nov 22, 2023
  • PyEMMA Public archive

    đźš‚ Python API for Emma's Markov Model Algorithms đźš‚

    markovmodel/PyEMMA’s past year of commit activity
    Python 325 LGPL-3.0 122 57 0 Updated Sep 11, 2023
  • ivampnets Public
    markovmodel/ivampnets’s past year of commit activity
    Python 25 2 1 0 Updated Feb 28, 2023
  • msmtools Public

    Tools for estimating and analyzing Markov state models

    markovmodel/msmtools’s past year of commit activity
    Python 41 LGPL-3.0 27 0 0 Updated Aug 15, 2022
  • pyemma-workshop Public
    markovmodel/pyemma-workshop’s past year of commit activity
    Jupyter Notebook 31 LGPL-3.0 9 2 0 Updated Feb 24, 2022
  • decomposed_msms Public
    markovmodel/decomposed_msms’s past year of commit activity
    Jupyter Notebook 3 0 0 0 Updated Feb 14, 2022
  • deepmsm Public

    Code to reproduce results for the paper: Progress in deep Markov State Modeling: Coarse graining and experimental data restraints

    markovmodel/deepmsm’s past year of commit activity
    Jupyter Notebook 8 2 0 0 Updated Oct 19, 2021
  • msmrd2 Public
    markovmodel/msmrd2’s past year of commit activity
    C++ 4 1 0 0 Updated Mar 18, 2021
  • PyEMMA_IPython Public

    PyEMMA Jupyter Notebooks

    markovmodel/PyEMMA_IPython’s past year of commit activity
    Jupyter Notebook 12 12 2 0 Updated Jan 28, 2021
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