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@marbl

MarBL

Maryland Bioinformatics Labs

Popular repositories Loading

  1. CHM13 CHM13 Public

    The complete sequence of a human genome

    1k 100

  2. canu canu Public

    A single molecule sequence assembler for genomes large and small.

    C++ 694 179

  3. Krona Krona Public

    Interactively explore metagenomes and more from a web browser.

    JavaScript 491 107

  4. Mash Mash Public

    Fast genome and metagenome distance estimation using MinHash

    C++ 428 94

  5. verkko verkko Public

    Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

    Python 375 33

  6. merqury merqury Public

    k-mer based assembly evaluation

    Shell 334 23

Repositories

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Showing 10 of 41 repositories
  • gingr Public
    marbl/gingr’s past year of commit activity
    C++ 14 5 15 1 Updated Dec 25, 2025
  • MetagenomeScope Public

    Visualization tool for (meta)genome assembly graphs

    marbl/MetagenomeScope’s past year of commit activity
    Python 22 GPL-3.0 8 111 0 Updated Dec 24, 2025
  • meryl-utility Public

    A collection of miscellaneous code used by Meryl, Canu and others.

    marbl/meryl-utility’s past year of commit activity
    C 1 3 0 0 Updated Dec 16, 2025
  • Winnowmap Public

    Long read / genome alignment software

    marbl/Winnowmap’s past year of commit activity
    C 310 29 32 1 Updated Dec 16, 2025
  • verkko Public

    Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

    marbl/verkko’s past year of commit activity
    Python 375 33 20 0 Updated Dec 11, 2025
  • GQC Public

    Python package for comparing genome assemblies and read data to the diploid Q100 benchmark

    marbl/GQC’s past year of commit activity
    Python 13 0 2 0 Updated Dec 10, 2025
  • TTT Public
    marbl/TTT’s past year of commit activity
    Python 3 0 1 0 Updated Nov 17, 2025
  • canu Public

    A single molecule sequence assembler for genomes large and small.

    marbl/canu’s past year of commit activity
    C++ 694 179 4 2 Updated Nov 13, 2025
  • anianns Public

    ANI based satellite annotation

    marbl/anianns’s past year of commit activity
    Python 13 0 1 0 Updated Nov 7, 2025
  • ModDotPlot Public
    marbl/ModDotPlot’s past year of commit activity
    Python 176 MIT 11 4 0 Updated Oct 13, 2025
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