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Commit 2e158c2

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Don't track columns as separate attribute, use the CSV header when copying (columns copied can change between HDF tables for a single SQL table)
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3 files changed

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‎pandas_to_postgres/_base_copy.py

Copy file name to clipboardExpand all lines: pandas_to_postgres/_base_copy.py
+3-3Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -33,7 +33,6 @@ def __init__(
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"""
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self.rows = 0
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self.columns = None
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self.csv_chunksize = csv_chunksize
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if not defer_sql_objs:
@@ -112,8 +111,9 @@ def copy_from_file(self, file_object: StringIO):
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file_object: CSV formatted data to COPY from DataFrame to PostgreSQL
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"""
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cur = self.conn.connection.cursor()
115-
cols = ", ".join([f"{col}" for col in self.columns])
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sql = f"COPY {self.sql_table} ({cols}) FROM STDIN WITH CSV HEADER FREEZE"
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file_object.seek(0)
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columns = file_object.readline()
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sql = f"COPY {self.sql_table} ({columns}) FROM STDIN WITH CSV FREEZE"
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cur.copy_expert(sql=sql, file=file_object)
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def data_formatting(self, df: DataFrame, functions: List[Callable] = [], **kwargs):

‎pandas_to_postgres/copy_df.py

Copy file name to clipboardExpand all lines: pandas_to_postgres/copy_df.py
-1Lines changed: 0 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -20,7 +20,6 @@ def __init__(
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self.df = df
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self.levels = levels
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self.columns = self.df.columns
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self.rows = self.df.shape[0]
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def copy(self, functions=[cast_pandas]):

‎pandas_to_postgres/copy_hdf.py

Copy file name to clipboardExpand all lines: pandas_to_postgres/copy_hdf.py
-10Lines changed: 0 additions & 10 deletions
Original file line numberDiff line numberDiff line change
@@ -62,15 +62,11 @@ def hdf_to_pg(self, data_formatters=[cast_pandas], data_formatter_kwargs={}):
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self.rows += len(df)
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data_formatter_kwargs["hdf_table"] = hdf_table
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logger.info("Formatting data")
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df = self.data_formatting(
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df, functions=data_formatters, **data_formatter_kwargs
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)
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71-
if self.columns is None:
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self.columns = df.columns
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logger.info("Creating generator for chunking dataframe")
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for chunk in df_generator(df, self.csv_chunksize):
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@@ -122,9 +118,6 @@ def hdf_to_pg(self, data_formatters=[cast_pandas], data_formatter_kwargs={}):
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df, functions=data_formatters, **data_formatter_kwargs
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)
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125-
if self.columns is None:
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self.columns = df.columns
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logger.info("Creating CSV in memory")
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fo = create_file_object(df)
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@@ -189,9 +182,6 @@ def hdf_to_pg(self, data_formatters=[cast_pandas], data_formatter_kwargs={}):
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df, functions=data_formatters, **data_formatter_kwargs
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)
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192-
if self.columns is None:
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self.columns = df.columns
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logger.info("Creating generator for chunking dataframe")
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for chunk in df_generator(df, self.csv_chunksize):
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logger.info("Creating CSV in memory")

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