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@cytomining

cytomining

Cytomining organization logo

Welcome to Cytomining!

Cytomining is a software ecosystem that maintains essential tools, workflows, and best practices for single-cell image-based profiling and microscopy data analysis research.

See the links below to get started!

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  1. DeepProfiler DeepProfiler Public

    Morphological profiling using deep learning

    Python 124 46

  2. pycytominer pycytominer Public

    Python package for processing image-based profiling data

    Python 130 40

  3. cytominer cytominer Public

    Methods for Image-Based Cell Profiling

    R 51 28

  4. CytoTable CytoTable Public

    Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.

    Python 17 6

  5. copairs copairs Public

    Find profile pairs and compute retrieval metrics between them.

    Python 21 10

  6. coSMicQC coSMicQC Public

    Single cell Morphology Quality Control (coSMicQC)

    Python 10 3

Repositories

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