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Commits on Feb 26, 2024

• fix: issue #1081 Sonar S1132 Strings literals should be placed on the left side when checking for equality

  jlerbsc

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Commits on Jun 27, 2023

• Sonar S2129 Constructors should not be used to instantiate 'String', 'BigInteger', 'BigDecimal' and primitive-wrapper classes (Issue #1066)

  jlerbsc

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Commits on May 21, 2023

• Fix Sonar S1130 throws declarations should not be superfluous

  jlerbsc

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Commits on Jul 26, 2022

• Test local, linear scheme alignment

  

  aegugup

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• Fix pointers[y] is null error

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  aegugup

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Commits on Oct 21, 2021

• Unifying the way ALHOSSARY is written across different platform

  aalhossary

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Commits on Jan 3, 2019

• Automatically convert spaces to tabs

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  sbliven

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Commits on Jul 29, 2018

• Merge branch 'issue712'

  MikkelVestergaard

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Commits on Jul 28, 2018

• Made a couple of test platform independent

  MikkelVestergaard

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Commits on Mar 15, 2018

• Converting junit3 to 4, thanks intellij

  josemduarte

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Commits on Mar 12, 2018

• Removing deprecations from v4

  josemduarte

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Commits on Mar 7, 2018

• Warnings cleanup

  josemduarte

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Commits on Apr 26, 2017

• Changing all line ending to unix (to match .gitattributes)

  sbliven

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Commits on Sep 8, 2016

• Remove some unimplemented methods in phylo

  lafita

  committed
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• Merge alignment and phylo modules #413

  lafita

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Commits on Aug 18, 2016

• making output less verbose

  andreasprlic

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• setting default log level to warn

  andreasprlic

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Commits on Jul 1, 2016

• Cleanup - squid:S1858 - "toString()" should never be called on a String object

  

  Mohamed Ezzat

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Commits on Jun 16, 2016

• squid:S2272 - "Iterator.next()" methods should throw "NoSuchElementException"

  

  Mohamed Ezzat

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Commits on Jun 15, 2016

• squid:S2063 - Comparators should be Serializable

  

  Mohamed Ezzat

  committed
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Commits on Apr 24, 2016

• squid:S2178 - Short-circuit logic should be used in boolean contexts

  

  Mohamed Ezzat

  committed
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Commits on Mar 10, 2016

• Light cleanup:

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  sbliven

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• Running spacestotabs on recent changes

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  sbliven

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Commits on Mar 9, 2016

• Merge branch 'master' into removeLoadChemCompInfo

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  josemduarte

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• Removing unnecessary casts

  sbliven

  committed
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• More whitespace fixes

  sbliven

  committed
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• Removing unused imports

  sbliven

  committed
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• Converting initial spaces to tabs.

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  sbliven

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• Remove trailing whitespace globally from .java files

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  sbliven

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• Update to remove docstring

  abradle

  committed
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• Merge remote-tracking branch 'upstream/master' into removeLoadChemCompInfo

  josemduarte

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• Merge pull request #427 from abradle/master

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  josemduarte

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Commits on Mar 8, 2016

• Fixing a few bugs that arose after loadChemCompInfo removal, #426

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  josemduarte

  committed
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• Create a test for issue #288 sub-optimal MSA

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  lafita

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Commits on Mar 7, 2016

• Updates to make serializable for Spark

  abradle

  committed
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