Fix #703: Recover from empty structure files in PDB_CACHE_DIR#774

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sbliven merged 11 commits intobiojava:bugfixes-4.2from

Jun 18, 2018

Commits on Jun 4, 2018

Improving CathInstallation logging
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Add test for #703
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Commits on Jun 8, 2018

Support initial comments in MMCif files (e.g. those generated by PyMOL)
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Make tests for #703 fail with an assertion
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Re-download empty structure or chemical component structures
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Set and restore the ChemCompGroupFactory singleton
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Commits on Jun 12, 2018

Incorporating suggestions from @josemduarte
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Commits on Jun 14, 2018

Add GlobalsHelper class to manage our global state
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Fix NullPointer when restoring global state
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Commits on Jun 15, 2018

Fix test failure due to PDB change
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Commits on Jun 18, 2018

Revert fix for mmcif files without auth_seq_id column
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