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Commits on Jan 7, 2025

• Javadoc fix: errors in modfinder module

  josemduarte

  committed
  bb07329

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Commits on Apr 18, 2024

• Fix sonar issue S2293 Replace the type specification in this constructor call with the diamond operator ('<>')

  jlerbsc

  committed
  b182121

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Commits on Feb 26, 2024

• fix: issue #1081 Sonar S1132 Strings literals should be placed on the left side when checking for equality

  jlerbsc

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  ac75f31

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Commits on Jun 30, 2023

• Try-with from sonar

  josemduarte

  committed
  1678958

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Commits on Nov 18, 2022

• vuln-fix: Temporary File Information Disclosure

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  JLLeitschuh

  and

  TeamModerne

  committed
  e3ecec5

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Commits on Nov 7, 2021

• Minor Miscellaneous formatting and import

  aalhossary

  committed
  419d5f0

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Commits on Sep 30, 2021

• Disabling test, #952

  josemduarte

  committed
  3e83b5b

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Commits on Jan 20, 2021

• compiling

  sbittrich

  committed
  1b164a9

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Commits on Jun 13, 2020

• refactor code to java 8 streams api

  balaji-s

  committed
  8998cbc

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Commits on Jan 3, 2019

• Manually fix cases of space indentation identation found by

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  sbliven

  committed
  5baab5e

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• Automatically convert spaces to tabs

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  sbliven

  committed
  9ae2c4f

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• Remove trailing spaces from java files

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  sbliven

  committed
  405b005

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Commits on Mar 15, 2018

• Converting junit3 to 4, thanks intellij

  josemduarte

  committed
  1458d85

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Commits on Mar 14, 2018

• Merge pull request #749 from josemduarte/removeV4deprecations

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  josemduarte

  authored
  763f7ec

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• Add license to all files

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  sbliven

  committed
  0e8c081

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Commits on Mar 12, 2018

• Removing deprecations from v4

  josemduarte

  committed
  9dbf83c

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Commits on Sep 8, 2017

• Fixing phosphosite urls and changing default url timeout to 30s

  josemduarte

  committed
  67ca7f2

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Commits on Apr 26, 2017

• Changing all line ending to unix (to match .gitattributes)

  sbliven

  committed
  21ea32a

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Commits on Nov 30, 2016

• addressing requested changes re. throwing exceptions.

  andreasprlic

  committed
  cc56288

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• moving to Java 7

  andreasprlic

  committed
  4ee39f8

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• now also accepting old header line

  andreasprlic

  committed
  8210484

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• #610 switching test to junit version 4

  andreasprlic

  committed
  e1dbb04

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Commits on Nov 29, 2016

• creating local dir, if it does not exist.

  andreasprlic

  committed
  1ce3e1e

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• fix for #610

  andreasprlic

  committed
  6f28672

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Commits on Aug 18, 2016

• making output less verbose

  andreasprlic

  committed
  56e81e6

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• setting default log level to warn

  andreasprlic

  committed
  07f244a

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Commits on Aug 8, 2016

• new utility classes to detect if a Group is polymeric, an amino acid, or a nucleotide group.

  andreasprlic

  committed
  46560c7

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Commits on Jun 15, 2016

• Merge branch 'master' of github.com:biojava/biojava

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  andreasprlic

  committed
  ea722c2

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• some formatting improvements.

  andreasprlic

  committed
  80dd887

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• Merge branch 'bugfixes-4.2'

  sbliven

  committed
  1206ace

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Commits on Jun 14, 2016

• merging in latest ptm modifications from master branch

  pwrose

  committed
  8b08584

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• Updating ptm list.

  pwrose

  committed
  3fa10a9

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• Added list of chromophores to ptm_list.xml file, updated unit tests

  pwrose

  committed
  417e2da

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Commits on Jun 10, 2016

• Reverting some changes to be compliant with the "old" way of doing chain IDs.

  andreasprlic

  committed
  cba1ca2

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• Merge pull request #502 from andreasprlic/master

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  josemduarte

  authored
  3509775

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