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onbiojava-7.1.1

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Commits on Mar 6, 2024

• Merge pull request #1086 from jlerbsc/master

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  josemduarte

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  81e0544

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• Merge pull request #1085 from josemduarte/miscfixes

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  josemduarte

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Commits on Mar 5, 2024

• fix sonar issue 2629 Logging arguments should not require evaluation

  jlerbsc

  committed
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Commits on Mar 4, 2024

• Merge pull request #1083 from josemduarte/parseEsmCifFix

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• Replacing home-made copy by Files.copy. Other minor fixes

  josemduarte

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Commits on Mar 2, 2024

• Better with ternary if

  josemduarte

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• Be more lenient with some missing atom_site fields

  josemduarte

  committed
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Commits on Feb 26, 2024

• fix: issue #1081 Sonar S1132 Strings literals should be placed on the left side when checking for equality

  jlerbsc

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Commits on Jan 8, 2024

• Changed the URLs to the mirrors from http to https. Changed the name of the URL path to reflect a change in the v2 naming.

  hilbertglm

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Commits on Dec 29, 2023

• Updated to Jakarta JAXB and Java 17

  hilbertglm

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Commits on Jun 30, 2023

• Merge remote-tracking branch 'origin/master'

  josemduarte

  committed
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• Try-with from sonar

  josemduarte

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Commits on Jun 27, 2023

• Sonar S2129 Constructors should not be used to instantiate 'String', 'BigInteger', 'BigDecimal' and primitive-wrapper classes (Issue #1066)

  jlerbsc

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Commits on Jun 21, 2023

• Second fix for sonar rule 's1130' throws declarations should not be superfluous. This fix is specific to constructor declarations.

  jlerbsc

  committed
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Commits on Jun 2, 2023

• Cleanup

  josemduarte

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Commits on Jun 1, 2023

• Merge pull request #1062 from jlerbsc/master

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  josemduarte

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Commits on May 24, 2023

• Improvements from review comments

  josemduarte

  committed
  4d146e1

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Commits on May 21, 2023

• Fix Sonar S1130 throws declarations should not be superfluous

  jlerbsc

  committed
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Commits on May 12, 2023

• Fixing empty seqres groups for cif files with no _entity

  josemduarte

  committed
  6431114

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• Fixing empty seqres groups for pdb files with not seqres

  josemduarte

  committed
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Commits on May 11, 2023

• Handling nulls in descriptions

  josemduarte

  committed
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Commits on May 10, 2023

• Writing out entity info in CIF

  josemduarte

  committed
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Commits on May 7, 2023

• Sonar S4973 '==' and '!=' should not be used when 'equals' is overridden #1052

  

  Pavan Kumar, Thummuru

  committed
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Commits on Apr 16, 2023

• Sonar S4973 '==' and '!=' should not be used when 'equals' is overridden #1052

  tmrpavan

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Commits on Apr 6, 2023

• Refactoring : Adding Static constants for NUCLEOTIDE_BACKBONE_ATOMS and AMINOACID_BACKBONE_ATOMS

  

  Sreejith Nair

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Commits on Apr 5, 2023

• Refactoring : Changes to refactor isPureTranslation method to eliminate complex conditional smell

  

  Sreejith Nair

  committed
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• Refactoring Decompose conditional : Changes to refactor getContactOverlapScore method to eliminate complex conditional smell

  

  Sreejith Nair

  committed
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• Refactoring : Extract method changes to reduce the cyclomatic complexity of getBackboneAtomArray

  

  Sreejith Nair

  committed
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Commits on Jan 30, 2023

• More nullpdbid tests (#1056)

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  josemduarte

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  sbliven

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  043eb40

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• Merge pull request #1055 from josemduarte/fixCifSrcNatParsing

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  josemduarte

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• Merge pull request #1046 from BulkSecurityGeneratorProjectV2/fix/JLL/temporary_file_local_information_disclosure

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  josemduarte

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• More comprehensive fix

  josemduarte

  committed
  5b99e7a

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Commits on Jan 29, 2023

• Fix for entity_src_nat category parsing, when some items missing

  josemduarte

  committed
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Commits on Jan 26, 2023

• Merge pull request #1024 from aalhossary/add_file_download_validation

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  aalhossary

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Commits on Dec 24, 2022

• Adding placeholder for several common hashing algorithms

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  aalhossary

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