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onbiojava-4.2.4

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Commits on Mar 10, 2016

• Light cleanup:

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  sbliven

  committed
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• Running spacestotabs on recent changes

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Commits on Mar 9, 2016

• Merge branch 'master' into removeLoadChemCompInfo

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  josemduarte

  committed
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• Removing unnecessary casts

  sbliven

  committed
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• More whitespace fixes

  sbliven

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• Removing unused imports

  sbliven

  committed
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• Converting initial spaces to tabs.

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  sbliven

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• Remove trailing whitespace globally from .java files

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  sbliven

  committed
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• Update to remove docstring

  abradle

  committed
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• Merge remote-tracking branch 'upstream/master' into removeLoadChemCompInfo

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  committed
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• Merge pull request #427 from abradle/master

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Commits on Mar 8, 2016

• Fixing a few bugs that arose after loadChemCompInfo removal, #426

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  josemduarte

  committed
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• Create a test for issue #288 sub-optimal MSA

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  lafita

  committed
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Commits on Mar 7, 2016

• Updates to make serializable for Spark

  abradle

  committed
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Commits on Jan 15, 2016

• Fix typo in GuideTreeTest

  lafita

  committed
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• Fix broken GuideTreeTest

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  lafita

  committed
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Commits on Nov 17, 2015

• Generalize the GuideTree calculation using phylo

  lafita

  committed
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Commits on Nov 12, 2015

• Merge commit '248cc08c7fbbdc02249bcac0f10481127b7d3ac7'

  josemduarte

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Commits on Oct 6, 2015

• Converting all line endings to Unix.

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  sbliven

  committed
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Commits on Sep 16, 2015

• Massive refactoring: moved alignment data structures from biojava-alignment to biojava-core.

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  paolopavan

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Commits on Mar 18, 2015

• Added a more complex test for NeedlemanWunsch using an alignment done by hand.

  

  dmyersturnbull

  authored and

  sbliven

  committed
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Commits on Jan 30, 2015

• Refactoring of all package names according to #245 #242 #240

  andreasprlic

  committed
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Commits on Jan 29, 2015

• Ran Optimize Imports across the whole project.

  andreasprlic

  committed
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• Major refactoring of package names in accordance with #245 #242 #240

  andreasprlic

  committed
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