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Description
Hi, my team discovered an issue trying to use pip_install to install python dependencies that use cpython on an M1 Mac with a full xcode installation.
Here's the error from the build logs:
building '_ruamel_yaml' extension
creating build/temp.macosx-11.0-arm64-3.9
Compiling with an SDK that doesn't seem to exist: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX11.3.sdk
Please check your Xcode installation
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -arch arm64 -mmacosx-version-min=11.0 -Wno-nullability-completeness -Wno-expansion-to-defined -Wno-undef-prefix -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX11.3.sdk -fPIC -I/var/folders/c8/z52g4gc5679gygt8z0dx0jqm0000gn/T/tmpjbwqfg64/tools/deps/include -I/var/folders/c8/z52g4gc5679gygt8z0dx0jqm0000gn/T/tmpjbwqfg64/tools/deps/include/ncursesw -I/var/folders/c8/z52g4gc5679gygt8z0dx0jqm0000gn/T/tmpjbwqfg64/tools/deps/include/uuid -Werror=unguarded-availability-new -g0 -I/private/var/tmp/_bazel_alex/bfcdc3c2b5b01e8ec0b8b8dd179fe4b8/external/r9python_darwin_arm64/include/python3.9 -c _ruamel_yaml.c -o build/temp.macosx-11.0-arm64-3.9/_ruamel_yaml.o
clang: warning: no such sysroot directory: '/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX11.3.sdk' [-Wmissing-sysroot]
In file included from _ruamel_yaml.c:6:
/private/var/tmp/_bazel_alex/bfcdc3c2b5b01e8ec0b8b8dd179fe4b8/external/r9python_darwin_arm64/include/python3.9/Python.h:25:10: fatal error: 'stdio.h' file not found
#include <stdio.h>
^~~~~~~~~
Running pip install on the same requirements outside of Bazel works as expected. The issue appears to be that it's looking for
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX11.3.sdk
although the machine has a MacOS SDK version 12.1.
I'm not really sure how it's landing on SDK v11.3 but as a workaround, we've been manually installing MacOSX11.3.sdk at that file path.
Any help debugging this issue would be appreciated.
Here's some additional debug info
$ gcc -E -xc++ - -v
Apple clang version 13.0.0 (clang-1300.0.29.30)
Target: x86_64-apple-darwin21.3.0
Thread model: posix
InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin
"/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang" -cc1 -triple x86_64-apple-macosx12.0.0 -Wundef-prefix=TARGET_OS_ -Wdeprecated-objc-isa-usage -Werror=deprecated-objc-isa-usage -Werror=implicit-function-declaration -E -disable-free -disable-llvm-verifier -discard-value-names -main-file-name - -mrelocation-model pic -pic-level 2 -mframe-pointer=all -fno-strict-return -fno-rounding-math -munwind-tables -target-sdk-version=12.1 -fvisibility-inlines-hidden-static-local-var -target-cpu penryn -tune-cpu generic -debugger-tuning=lldb -target-linker-version 711 -v -resource-dir /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.0.0 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -I/usr/local/include -stdlib=libc++ -internal-isystem /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1 -internal-isystem /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/local/include -internal-isystem /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.0.0/include -internal-externc-isystem /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include -internal-externc-isystem /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include -Wno-reorder-init-list -Wno-implicit-int-float-conversion -Wno-c99-designator -Wno-final-dtor-non-final-class -Wno-extra-semi-stmt -Wno-misleading-indentation -Wno-quoted-include-in-framework-header -Wno-implicit-fallthrough -Wno-enum-enum-conversion -Wno-enum-float-conversion -Wno-elaborated-enum-base -fdeprecated-macro -fdebug-compilation-dir /Users/alex/r9/git -ferror-limit 19 -stack-protector 1 -fstack-check -mdarwin-stkchk-strong-link -fblocks -fencode-extended-block-signature -fregister-global-dtors-with-atexit -fgnuc-version=4.2.1 -fno-cxx-modules -fcxx-exceptions -fexceptions -fmax-type-align=16 -fcommon -fcolor-diagnostics -clang-vendor-feature=+nullptrToBoolConversion -clang-vendor-feature=+messageToSelfInClassMethodIdReturnType -clang-vendor-feature=+disableInferNewAvailabilityFromInit -clang-vendor-feature=+disableNeonImmediateRangeCheck -clang-vendor-feature=+disableNonDependentMemberExprInCurrentInstantiation -fno-odr-hash-protocols -clang-vendor-feature=+revert09abecef7bbf -mllvm -disable-aligned-alloc-awareness=1 -mllvm -enable-dse-memoryssa=0 -o - -x c++ -
clang -cc1 version 13.0.0 (clang-1300.0.29.30) default target x86_64-apple-darwin21.3.0
ignoring nonexistent directory "/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/local/include"
ignoring nonexistent directory "/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/Library/Frameworks"
#include "..." search starts here:
#include <...> search starts here:
/usr/local/include
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.0.0/include
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/System/Library/Frameworks (framework directory)
End of search list.
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