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atiftw/dataengineer-transformations-python

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Data transformations with Python

This is a collection of Python jobs that are supposed to transform data. These jobs are using PySpark to process larger volumes of data and are supposed to run on a Spark cluster (via spark-submit).

Pre-requisites

Please make sure you have the following installed and can run them

  • Python (3.11 or later), you can use for example pyenv to manage your python versions locally
  • Poetry
  • Java (11)

Install all dependencies

poetry install

Setup

Run tests

Run unit tests

poetry run pytest tests/unit

Run integration tests

poetry run pytest tests/integration

Run style checks

poetry run mypy --ignore-missing-imports --disallow-untyped-calls --disallow-untyped-defs --disallow-incomplete-defs \
            data_transformations tests

poetry run pylint data_transformations tests

This is running the linter and a type checker.

Create package (optional)

This will create a tar.gz and a .wheel in dist/ folder:

# Install pre-requisites needed by batect
# For mac users:
./go.sh install-with-docker-desktop
OR
./go.sh install-with-colima

# For windows/linux users:
# Please ensure Docker and java >=8 is installed
scripts\install_choco.ps1
scripts\install.bat

# For local laptop setup ensure that Java 11 with Spark 3.5.1 is available. More details in README-LOCAL.md

More: https://python-poetry.org/docs/cli/#build


STOP HERE: Do not code before the interview begins.

Gearing Up for the Pairing Session

Please be sure to complete the below tasks before the pairing session:

  1. Get a high-level understanding of the code and test dataset structure
  2. Have your preferred text editor or IDE setup and ready to go.
  3. Have your coding environment ready by installing Python and Poetry.
  4. Ensure that you are able to run all commands mentioned in this README (note that a failing test from pytest is expected).

Please note that you DO NOT have to complete the code/tasks inside the src/ folder. These are intended to be completed collaboratively during the pairing session.

Jobs

There are two applications in this repo: Word Count, and Citibike.

Currently, these exist as skeletons, and have some initial test cases which are defined but ignored. For each application, please un-ignore the tests and implement the missing logic.

Word Count

A NLP model is dependent on a specific input file. This job is supposed to preprocess a given text file to produce this input file for the NLP model (feature engineering). This job will count the occurrences of a word within the given text file (corpus).

There is a dump of the datalake for this under resources/word_count/words.txt with a text file.

Input

Simple *.txt file containing text.

Output

A single *.csv file containing data similar to:

"word","count"
"a","3"
"an","5"
...

Run the job

Please make sure to package the code before submitting the spark job (poetry build)

poetry run spark-submit \
    --master local \
    --py-files dist/data_transformations-*.whl \
    jobs/word_count.py \
    <INPUT_FILE_PATH> \
    <OUTPUT_PATH>

Citibike

This problem uses data made publicly available by Citibike, a New York based bike share company.

For analytics purposes, the BI department of a hypothetical bike share company would like to present dashboards, displaying the distance each bike was driven. There is a *.csv file that contains historical data of previous bike rides. This input file needs to be processed in multiple steps. There is a pipeline running these jobs.

citibike pipeline

There is a dump of the datalake for this under resources/citibike/citibike.csv with historical data.

Ingest

Reads a *.csv file and transforms it to parquet format. The column names will be sanitized (whitespaces replaced).

Input

Historical bike ride *.csv file:

"tripduration","starttime","stoptime","start station id","start station name","start station latitude",...
364,"2017-07-01 00:00:00","2017-07-01 00:06:05",539,"Metropolitan Ave & Bedford Ave",40.71534825,...
...
Output

*.parquet files containing the same content

"tripduration","starttime","stoptime","start_station_id","start_station_name","start_station_latitude",...
364,"2017-07-01 00:00:00","2017-07-01 00:06:05",539,"Metropolitan Ave & Bedford Ave",40.71534825,...
...
Run the job

Please make sure to package the code before submitting the spark job (poetry build)

poetry run spark-submit \
    --master local \
    --py-files dist/data_transformations-*.whl \
    jobs/citibike_ingest.py \
    <INPUT_FILE_PATH> \
    <OUTPUT_PATH>

Distance calculation

This job takes bike trip information and calculates the "as the crow flies" distance traveled for each trip. It reads the previously ingested data parquet files.

Hint:

Input

Historical bike ride *.parquet files

"tripduration",...
364,...
...
Outputs

*.parquet files containing historical data with distance column containing the calculated distance.

"tripduration",...,"distance"
364,...,1.34
...
Run the job

Please make sure to package the code before submitting the spark job (poetry build)

poetry run spark-submit \
    --master local \
    --py-files dist/data_transformations-*.whl \
    jobs/citibike_distance_calculation.py \
    <INPUT_PATH> \
    <OUTPUT_PATH>

Running the code inside container

If you would like to run the code in Docker, please follow instructions here.

Running the code on Gitpod

Alternatively, you can setup the environment using

Open in Gitpod

It's recommend that you setup ssh to Gitpod so that you can use VS Code from local to remote to Gitpod.

There's an initialize script setup that takes around 3 minutes to complete. Once you use paste this repository link in new Workspace, please wait until the packages are installed. After everything is setup, select Poetry's environment by clicking on thumbs up icon and navigate to Testing tab and hit refresh icon to discover tests.

Common issue with VS Code's Testing

If Testing tab complains about Python Interpreter, run poetry shell in terminal to get the bin path, replace activate with python3 to resolve the issue.

If poetry shell activate with this path

/workspace/.pyenv_mirror/poetry/virtualenvs/{project_name}-py{python_version}/bin/activate

Paste this into Python Interpreter prompt

/workspace/.pyenv_mirror/poetry/virtualenvs/{project_name}-py{python_version}/bin/python3

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