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Commits on Feb 15, 2026

• Merge pull request #2 from QinLab/codex/add-details-on-cnn-methods-and-training

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• docs: add reproducibility-focused CNN methods paragraph

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• Merge pull request #1 from QinLab/codex/add-details-on-downsampling-and-preprocessing

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• Expand training data preprocessing and alignment documentation

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Commits on Sep 16, 2025

• Update README.md

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Commits on Aug 12, 2025

• complete the script fro ploting the watrefall plot for misclassified sequences

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• add functions to plot waterfall plot

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• update beeswarm plot

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• waterfall plot for misclassified sequences

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Commits on Aug 8, 2025

• updated

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Commits on Aug 7, 2025

• heatmap for shap signs

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• utils for heatmap

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• Update README.md

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• adding heatmap

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Commits on Oct 30, 2024

• cm for cnn and beeswarm plot for alpha

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• update name based on missclassification plots

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• update confusion matrix

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Commits on Oct 24, 2024

• link of force plots

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• remove html file in repository not localy

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• delete unwanted folder

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Commits on Oct 18, 2024

• plot beeswarm plot for each voc

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• beeswarm plot

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• add some function for beeswarm plot

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• add some function for beeswarm plot

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• update

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Commits on Oct 14, 2024

• rnaming a function

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• add venn diagram of gwas and top shap which are common within all VOCs

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Commits on Oct 13, 2024

• rename a function to make the progress more clear

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Commits on Oct 8, 2024

• update

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• update

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• venn and pie chart for common SHAP values between all sequences

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• functions for missclassified python file

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• waterfall plot for missclassified sequences

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Commits on Oct 4, 2024

• based on pie chart

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• venn shap plot with pie chart

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